RchiOBHm_Chr6g0247721
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0021344
Physical Location & Seq
Reverse (-)
3734793 .. 3736760
1968 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22205

Sequence Viewer

Length: 522 bp
ATGGGATCATATCTGGTTCGAGGTTCTTTACCTCGTGCTACAGGGAGCACAAACATGAACAGTCAGTCAAGTCGCTCACATGCTATATTTACAATAACCATGGAGCAAAAGAAGATTTCTCACTGTCTGAATGGAGCAAATAATGATGATATCGGTGATGACATACTATGTGCAAAACTCCATTTAGTTGACCTAGCAGGTTCTGAGCGGGCAAAACGAACAGGTGCAGATGGCATGCACTTGAAAGAAGCTCTCCTACTCTTGGCACGGCTATGTCAACCTTATTCCAGCTTTCACTTTTGTACTTGCAGTTATATTCAGGTTTTGCCCTCCTCTTATGTCTTTGGTGTAAAATGTTGTAGCTTGCTTTTCTATTCTATTAGGAAAATTGAGCATACATTGGAAGAAACCTTCATCGAGATTAAGAATCAGGGTTATTTTCTTGTTTTGGAATGTGATCATCACAGTTGTTTTATCTTGTTAATGTGTTTTAGATTAGTTTTATGGAAGATTTGGTTTTAG

Protein Analysis

173

Amino Acids

19.64

Weight (kDa)

8.04

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kinesin PF00225 4 - 84 3.2e-19 Kinesin motor domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021344)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0141361 RchiOBHm_Chr4g0404791 RchiOBHm_Chr6g0247721
rosa_samantha Rh1AG155600 Rh5CG368400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 188
AccBSI CCGCTC 1 cut(s) 208
AciI CCGC 1 cut(s) 208
AclWI GGATC 1 cut(s) 13
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 1 cut(s) 244
AluBI AGCT 3 cut(s) 251, 291, 363
AluI AGCT 3 cut(s) 251, 291, 363
Alw21I GWGCWC 1 cut(s) 50
AlwI GGATC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 167
BarI GAAGNNNNNNTAC 2 cut(s) 240, 272
BauI CACGAG 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 50
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 284
BclI TGATCA 1 cut(s) 457
BfaI CTAG 1 cut(s) 194
BfmI CTRYAG 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 322
BsgI GTGCAG 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 5, 457
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 1 cut(s) 208
BspCNI CTCAG 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 188
BspPI GGATC 1 cut(s) 13
BsrBI CCGCTC 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 2 cut(s) 5, 457
BssSI CACGAG 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 33
Bst4CI ACNGT 3 cut(s) 62, 125, 467
BstC8I GCNNGC 3 cut(s) 210, 236, 365
BstDEI CTNAG 1 cut(s) 204
BstDSI CCRYGG 1 cut(s) 99
BstKTI GATC 2 cut(s) 8, 460
BstMBI GATC 2 cut(s) 5, 457
BstNSI RCATGY 2 cut(s) 83, 238
BstSFI CTRYAG 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 121
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 3 cut(s) 210, 236, 365
CaiI CAGNNNCTG 1 cut(s) 203
Csp6I GTAC 1 cut(s) 303
CviAII CATG 4 cut(s) 55, 80, 100, 235
CviJI RGCY 4 cut(s) 251, 271, 291, 363
CviKI_1 RGCY 4 cut(s) 251, 271, 291, 363
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 1 cut(s) 204
DpnI GATC 2 cut(s) 7, 459
DpnII GATC 2 cut(s) 5, 457
Eco130I CCWWGG 1 cut(s) 99
Eco32I GATATC 1 cut(s) 151
EcoRV GATATC 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 4 cut(s) 58, 83, 103, 238
FatI CATG 4 cut(s) 54, 79, 99, 234
FauI CCCGC 1 cut(s) 201
FbaI TGATCA 1 cut(s) 457
FspBI CTAG 1 cut(s) 194
Hin1II CATG 4 cut(s) 58, 83, 103, 238
HincII GTYRAC 2 cut(s) 190, 278
HindII GTYRAC 2 cut(s) 190, 278
HinfI GANTC 1 cut(s) 427
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 190, 278
Hpy188I TCNGA 2 cut(s) 129, 205
Hpy188III TCNNGA 1 cut(s) 418
Hpy8I GTNNAC 2 cut(s) 190, 278
HpyAV CCTTC 1 cut(s) 421
HpyCH4III ACNGT 3 cut(s) 62, 125, 467
HpyCH4V TGCA 4 cut(s) 173, 227, 238, 309
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 4 cut(s) 58, 83, 103, 238
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 2 cut(s) 5, 457
LmnI GCTCC 3 cut(s) 45, 103, 134
LpnPI CCDG 6 cut(s) 27, 183, 207, 301, 305, 416
MaeI CTAG 1 cut(s) 194
MalI GATC 2 cut(s) 7, 459
MbiI CCGCTC 1 cut(s) 208
MboI GATC 2 cut(s) 5, 457
MboII GAAGA 3 cut(s) 124, 416, 520
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 1 cut(s) 387
MnlI CCTC 4 cut(s) 14, 42, 340, 343
MseI TTAA 2 cut(s) 423, 482
MslI CAYNNNNRTG 2 cut(s) 53, 271
NcoI CCATGG 1 cut(s) 99
NdeII GATC 2 cut(s) 5, 457
NlaIII CATG 4 cut(s) 58, 83, 103, 238
NspI RCATGY 2 cut(s) 83, 238
PaeI GCATGC 1 cut(s) 238
PfeI GAWTC 1 cut(s) 427
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
RseI CAYNNNNRTG 2 cut(s) 53, 271
SaqAI TTAA 2 cut(s) 423, 482
Sau3AI GATC 2 cut(s) 5, 457
SduI GDGCHC 1 cut(s) 50
SfcI CTRYAG 1 cut(s) 39
SmiMI CAYNNNNRTG 2 cut(s) 53, 271
SphI GCATGC 1 cut(s) 238
Sse9I AATT 1 cut(s) 387
SsiI CCGC 1 cut(s) 208
SspMI CTAG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 3 cut(s) 62, 125, 467
TaqI TCGA 2 cut(s) 19, 417
TasI AATT 1 cut(s) 387
TatI WGTACW 1 cut(s) 302
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 2 cut(s) 423, 482
Tru9I TTAA 2 cut(s) 423, 482
TscAI CASTG 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 71, 403
TspRI CASTG 1 cut(s) 128
XceI RCATGY 2 cut(s) 83, 238
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.