RchiOBHm_Chr2g0143211

GTP-binding protein that may be involved in cell development

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0022663
Physical Location & Seq
Forward (+)
60910945 .. 60911819
875 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51331

Sequence Viewer

Length: 372 bp
ATGGAACTCCCTAACAAGGTGACATGCAAACGTTTAAATTCAGATCTTAGGGTTGAGGCAAATGCCGGAAGAAAATATAATACCTTGCTGCTTATTATATGGTTGTTTGTTTATGCAGCATTTGAAAAGCAGAGTGTCCTCTTTGCCCTTAATGTTTCAGATATAGTGCTCATTAAGATGTGGTACCATGATATTGGTTGTGAGCAAGCTGCAAATAAGCCTATCCTAAAGACTGTGATCCAGCTAGCCTGGGTCGAGTTTTTGGTAGTGTGGCTGTCCCTTTTGTTTGCAGAAGCCTTTGGAAAATTGAGAACCGGTTATCAGAGAAGACATCAGAAGCCTGAAGCCCGCAAGGAAACTCTGTTAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

123

Amino Acids

14.27

Weight (kDa)

9.51

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RHD3_GTPase PF05879 40 - 83 2.5e-15 Root hair defective 3 GTP-binding protein (RHD3) GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022663)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0143211
rosa_samantha Rh2AG432200 Rh2BG440700 Rh2CG418000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 183
AciI CCGC 1 cut(s) 349
AclI AACGTT 1 cut(s) 31
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 363
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 16
AgeI ACCGGT 1 cut(s) 314
AgsI TTSAA 1 cut(s) 125
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 2 cut(s) 209, 244
AluI AGCT 2 cut(s) 209, 244
Alw21I GWGCWC 1 cut(s) 171
AlwI GGATC 1 cut(s) 232
ApeKI GCWGC 3 cut(s) 88, 116, 209
ApoI RAATTY 1 cut(s) 37
AsiGI ACCGGT 1 cut(s) 314
Asp718I GGTACC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 31
AsuNHI GCTAGC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 3 cut(s) 75, 128, 196
BciT130I CCWGG 1 cut(s) 250
BfaI CTAG 1 cut(s) 245
BglII AGATCT 1 cut(s) 43
BisI GCNGC 3 cut(s) 89, 117, 210
BlsI GCNGC 3 cut(s) 90, 118, 211
Bme1390I CCNGG 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 250
BmtI GCTAGC 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 1 cut(s) 314
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse118I RCCGGY 1 cut(s) 314
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 16
BseXI GCAGC 3 cut(s) 75, 128, 196
BshNI GGYRCC 1 cut(s) 183
BshTI ACCGGT 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 2 cut(s) 66, 315
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 43, 237
BspACI CCGC 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 185
BspOI GCTAGC 1 cut(s) 248
BspPI GGATC 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 2 cut(s) 43, 237
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 235
BstC8I GCNNGC 3 cut(s) 207, 246, 349
BstDEI CTNAG 1 cut(s) 47
BstKTI GATC 2 cut(s) 46, 240
BstMBI GATC 2 cut(s) 43, 237
BstNI CCWGG 1 cut(s) 250
BstNSI RCATGY 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 248
BstV1I GCAGC 3 cut(s) 75, 128, 196
BstV2I GAAGAC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 194
BstYI RGATCY 1 cut(s) 43
Cac8I GCNNGC 3 cut(s) 207, 246, 349
Cfr10I RCCGGY 1 cut(s) 314
Csp6I GTAC 1 cut(s) 184
CspAI ACCGGT 1 cut(s) 314
CviAII CATG 2 cut(s) 24, 188
CviJI RGCY 8 cut(s) 209, 220, 244, 248, 274, 296, 340, 347
CviKI_1 RGCY 8 cut(s) 209, 220, 244, 248, 274, 296, 340, 347
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 47
DpnI GATC 2 cut(s) 45, 239
DpnII GATC 2 cut(s) 43, 237
DraI TTTAAA 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 248
FaeI CATG 2 cut(s) 27, 191
FaiI YATR 7 cut(s) 25, 78, 98, 100, 114, 164, 189
FaqI GGGAC 1 cut(s) 262
FatI CATG 2 cut(s) 23, 187
FauI CCCGC 1 cut(s) 356
Fnu4HI GCNGC 3 cut(s) 89, 117, 210
Fsp4HI GCNGC 3 cut(s) 89, 117, 210
FspBI CTAG 1 cut(s) 245
GluI GCNGC 3 cut(s) 89, 117, 210
HapII CCGG 2 cut(s) 66, 315
Hin1II CATG 2 cut(s) 27, 191
HpaII CCGG 2 cut(s) 66, 315
HphI GGTGA 1 cut(s) 31
Hpy188I TCNGA 4 cut(s) 43, 160, 324, 336
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 4 cut(s) 27, 116, 212, 290
HpyF3I CTNAG 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 2 cut(s) 27, 191
KpnI GGTACC 1 cut(s) 187
Kzo9I GATC 2 cut(s) 43, 237
LpnPI CCDG 6 cut(s) 79, 235, 254, 262, 328, 354
Lsp1109I GCAGC 3 cut(s) 75, 128, 196
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 1 cut(s) 19
MalI GATC 2 cut(s) 45, 239
MboI GATC 2 cut(s) 43, 237
MboII GAAGA 2 cut(s) 81, 339
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 2 cut(s) 37, 305
MnlI CCTC 2 cut(s) 49, 149
MseI TTAA 3 cut(s) 35, 150, 174
MslI CAYNNNNRTG 1 cut(s) 176
MspI CCGG 2 cut(s) 66, 315
MspR9I CCNGG 1 cut(s) 250
MvaI CCWGG 1 cut(s) 250
NdeII GATC 2 cut(s) 43, 237
NheI GCTAGC 1 cut(s) 244
NlaIII CATG 2 cut(s) 27, 191
NlaIV GGNNCC 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 27
PinAI ACCGGT 1 cut(s) 314
PkrI GCNGC 3 cut(s) 90, 118, 211
Psp1406I AACGTT 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 185
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 3 cut(s) 35, 150, 174
SatI GCNGC 3 cut(s) 89, 117, 210
Sau3AI GATC 2 cut(s) 43, 237
ScrFI CCNGG 1 cut(s) 250
SduI GDGCHC 1 cut(s) 171
SetI ASST 6 cut(s) 21, 34, 86, 211, 246, 370
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 2 cut(s) 37, 305
SsiI CCGC 1 cut(s) 349
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 248
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 255
TasI AATT 2 cut(s) 37, 305
Tru1I TTAA 3 cut(s) 35, 150, 174
Tru9I TTAA 3 cut(s) 35, 150, 174
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 3 cut(s) 88, 116, 209
Tsp45I GTSAC 1 cut(s) 19
XapI RAATTY 1 cut(s) 37
XceI RCATGY 1 cut(s) 27
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.