Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0022663

Physical Location & Seq

Genomic Coordinates Forward (+)

62440586 .. 62443516

Gene Structure 2931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG440700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAACTCCCTGACAAGGTGACATGCAAACGTTTAAATTCAGATCTTAGGGTTGAGGCAAATGCCGGAAGAAAATATAATACCTTGCTGCTTATTATATGGTTGTTTGTTTATGCAGCATTTGAAAAGCAGAGTGTCCTCTTTGCCCTTAATGTTTCAGATATAGTGCTCATTAAGATGTGGTGCCATGATATTGGCTGTGAGCAAGCTGCAAATAAGCCTATCCTAAAGACTGTGATCCAGGTGATGGTGCGATTGGTTAGTCCACGTAAACCAACTTTGATGTTCATCATCTGTCATAAGACAAGGCTAGCCTGGGTCGAGTTTTTGGTAGTGTGGCTGTCCCTTTTGTTTGCAGAAGCCTTTGGAAAATTGAGAACCGGTTATCAGAGAAGACATCAGAAGGTGATTGATATGGTTATACTTTATTTATTATTTTTTGTATTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

150

Amino Acids

17.55

Weight (kDa)

9.66

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RHD3_GTPase	PF05879	40 - 110	5.3e-22	Root hair defective 3 GTP-binding protein (RHD3) GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022663)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143211
rosa_samantha	Rh2AG432200 Rh2BG440700 Rh2CG418000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	183
AccB7I	CCANNNNNTGG	1 cut(s)	247
AclI	AACGTT	1 cut(s)	31
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	37
AfiI	CCNNNNNNNGG	2 cut(s)	16, 247
AgeI	ACCGGT	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	125
AjnI	CCWGG	2 cut(s)	240, 314
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	232
ApeKI	GCWGC	3 cut(s)	88, 116, 209
ApoI	RAATTY	1 cut(s)	37
AsiGI	ACCGGT	1 cut(s)	380
AsuHPI	GGTGA	3 cut(s)	31, 256, 418
AsuNHI	GCTAGC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	3 cut(s)	75, 128, 196
BccI	CCATC	1 cut(s)	241
BciT130I	CCWGG	2 cut(s)	242, 316
BfaI	CTAG	1 cut(s)	311
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	3 cut(s)	89, 117, 210
BlsI	GCNGC	3 cut(s)	90, 118, 211
Bme1390I	CCNGG	2 cut(s)	242, 316
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	2 cut(s)	242, 316
BmtI	GCTAGC	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	400
BsaAI	YACGTR	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 247
Bse118I	RCCGGY	1 cut(s)	380
Bse8I	GATNNNNATC	1 cut(s)	287
BseBI	CCWGG	2 cut(s)	242, 316
BseDI	CCNNGG	1 cut(s)	315
BseJI	GATNNNNATC	1 cut(s)	287
BseLI	CCNNNNNNNGG	2 cut(s)	16, 247
BseXI	GCAGC	3 cut(s)	75, 128, 196
BshNI	GGYRCC	1 cut(s)	183
BshTI	ACCGGT	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	66, 381
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	16, 247
BsmFI	GGGAC	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	43, 237
BspLI	GGNNCC	1 cut(s)	185
BspOI	GCTAGC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	2 cut(s)	43, 237
Bst2UI	CCWGG	2 cut(s)	242, 316
Bst4CI	ACNGT	1 cut(s)	235
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	207, 312
BstDEI	CTNAG	1 cut(s)	47
BstKTI	GATC	2 cut(s)	46, 240
BstMBI	GATC	2 cut(s)	43, 237
BstNI	CCWGG	2 cut(s)	242, 316
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	2 cut(s)	240, 314
BstV1I	GCAGC	3 cut(s)	75, 128, 196
BstV2I	GAAGAC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	207, 312
Cfr10I	RCCGGY	1 cut(s)	380
CspAI	ACCGGT	1 cut(s)	380
CviAII	CATG	2 cut(s)	24, 188
CviJI	RGCY	7 cut(s)	198, 209, 220, 310, 314, 340, 362
CviKI_1	RGCY	7 cut(s)	198, 209, 220, 310, 314, 340, 362
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	2 cut(s)	45, 239
DpnII	GATC	2 cut(s)	43, 237
DraI	TTTAAA	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	240, 314
FaeI	CATG	2 cut(s)	27, 191
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	2 cut(s)	23, 187
Fnu4HI	GCNGC	3 cut(s)	89, 117, 210
Fsp4HI	GCNGC	3 cut(s)	89, 117, 210
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	3 cut(s)	89, 117, 210
HapII	CCGG	2 cut(s)	66, 381
Hin1II	CATG	2 cut(s)	27, 191
HpaII	CCGG	2 cut(s)	66, 381
HphI	GGTGA	3 cut(s)	31, 256, 418
Hpy166II	GTNNAC	2 cut(s)	266, 272
Hpy188I	TCNGA	4 cut(s)	43, 160, 390, 402
Hpy8I	GTNNAC	2 cut(s)	266, 272
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	31, 268
HpyCH4V	TGCA	4 cut(s)	27, 116, 212, 356
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	2 cut(s)	31, 268
Hsp92II	CATG	2 cut(s)	27, 191
Kzo9I	GATC	2 cut(s)	43, 237
LpnPI	CCDG	7 cut(s)	24, 79, 227, 254, 301, 328, 394
Lsp1109I	GCAGC	3 cut(s)	75, 128, 196
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	2 cut(s)	31, 268
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	45, 239
MboI	GATC	2 cut(s)	43, 237
MboII	GAAGA	2 cut(s)	81, 405
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	2 cut(s)	37, 371
MnlI	CCTC	2 cut(s)	49, 149
MseI	TTAA	3 cut(s)	35, 150, 174
MslI	CAYNNNNRTG	1 cut(s)	176
MspI	CCGG	2 cut(s)	66, 381
MspR9I	CCNGG	2 cut(s)	242, 316
MvaI	CCWGG	2 cut(s)	242, 316
NdeII	GATC	2 cut(s)	43, 237
NheI	GCTAGC	1 cut(s)	310
NlaIII	CATG	2 cut(s)	27, 191
NlaIV	GGNNCC	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	19
NspI	RCATGY	1 cut(s)	27
PflMI	CCANNNNNTGG	1 cut(s)	247
PinAI	ACCGGT	1 cut(s)	380
PkrI	GCNGC	3 cut(s)	90, 118, 211
Ppu21I	YACGTR	1 cut(s)	269
Psp1406I	AACGTT	1 cut(s)	31
Psp6I	CCWGG	2 cut(s)	240, 314
PspGI	CCWGG	2 cut(s)	240, 314
PspN4I	GGNNCC	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	3 cut(s)	35, 150, 174
SatI	GCNGC	3 cut(s)	89, 117, 210
Sau3AI	GATC	2 cut(s)	43, 237
ScrFI	CCNGG	2 cut(s)	242, 316
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	7 cut(s)	21, 34, 86, 211, 246, 271, 408
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	37, 371
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	2 cut(s)	240, 314
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	34, 271
TaqI	TCGA	1 cut(s)	321
TasI	AATT	2 cut(s)	37, 371
Tru1I	TTAA	3 cut(s)	35, 150, 174
Tru9I	TTAA	3 cut(s)	35, 150, 174
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	3 cut(s)	88, 116, 209
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	277
Van91I	CCANNNNNTGG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	1 cut(s)	27
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.