Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0022663

Physical Location & Seq

Genomic Coordinates Forward (+)

64165031 .. 64165793

Gene Structure 763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG432200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAACTCCCTGACAAGGTGACATGCAAACGTTTAAATTCAGATCTTAGGGTTGAGGCAAATGCTGGAAGAAAATATAATACCTTGCTGCTTATTATATGGTTGTTTGTTTATGCAGCATTTGAAAAGCAGAGTGTCCTCTTTGCCCTTTCTGTTTCAGATATAGTGCTCATTAAGATGTGGTGCCATGATATTGGCTGTGAGCAAGATGCAAATAAGCCTATCCTAAAGACTGTGATCCAGGTGATGATGCGATTGGTTAGTCCACGTAAACCAACTTTGATGTTCGTCATCTGTCATAAGACAAGGCTAGCCTGGATCGAGTTTTTGGTAGTGTGGCTGTCCCTTTTGTTTGCAGAAGCCTTTGGAAAATTGAGAACCGGTTATCAGAGAAGACATCAGAAGGTGACTGATATGGTACCAAGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

143

Amino Acids

16.72

Weight (kDa)

9.81

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RHD3_GTPase	PF05879	40 - 111	5.2e-23	Root hair defective 3 GTP-binding protein (RHD3) GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022663)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0143211
rosa_samantha	Rh2AG432200 Rh2BG440700 Rh2CG418000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	418
AccB1I	GGYRCC	2 cut(s)	183, 418
AclI	AACGTT	1 cut(s)	31
AclWI	GGATC	2 cut(s)	232, 326
AcsI	RAATTY	1 cut(s)	37
AfaI	GTAC	1 cut(s)	420
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgeI	ACCGGT	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	125
AjnI	CCWGG	2 cut(s)	240, 314
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	2 cut(s)	232, 326
ApeKI	GCWGC	2 cut(s)	88, 116
ApoI	RAATTY	1 cut(s)	37
AsiGI	ACCGGT	1 cut(s)	380
Asp718I	GGTACC	1 cut(s)	418
AsuHPI	GGTGA	3 cut(s)	31, 256, 418
AsuNHI	GCTAGC	1 cut(s)	310
BanI	GGYRCC	2 cut(s)	183, 418
BbsI	GAAGAC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	75, 128
BciT130I	CCWGG	2 cut(s)	242, 316
BfaI	CTAG	1 cut(s)	311
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	2 cut(s)	89, 117
BlsI	GCNGC	2 cut(s)	90, 118
Bme1390I	CCNGG	2 cut(s)	242, 316
BmiI	GGNNCC	2 cut(s)	185, 420
BmrFI	CCNGG	2 cut(s)	242, 316
BmsI	GCATC	2 cut(s)	199, 240
BmtI	GCTAGC	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	400
BsaAI	YACGTR	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse118I	RCCGGY	1 cut(s)	380
BseBI	CCWGG	2 cut(s)	242, 316
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseXI	GCAGC	2 cut(s)	75, 128
BshNI	GGYRCC	2 cut(s)	183, 418
BshTI	ACCGGT	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	381
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	43, 237, 318
BspLI	GGNNCC	2 cut(s)	185, 420
BspOI	GCTAGC	1 cut(s)	314
BspPI	GGATC	2 cut(s)	232, 326
BspT107I	GGYRCC	2 cut(s)	183, 418
BsrFI	RCCGGY	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	380
BssMI	GATC	3 cut(s)	43, 237, 318
Bst2UI	CCWGG	2 cut(s)	242, 316
Bst4CI	ACNGT	1 cut(s)	235
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	47
BstKTI	GATC	3 cut(s)	46, 240, 321
BstMBI	GATC	3 cut(s)	43, 237, 318
BstNI	CCWGG	2 cut(s)	242, 316
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	2 cut(s)	240, 314
BstV1I	GCAGC	2 cut(s)	75, 128
BstV2I	GAAGAC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	312
Cfr10I	RCCGGY	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	419
CspAI	ACCGGT	1 cut(s)	380
CviAII	CATG	2 cut(s)	24, 188
CviJI	RGCY	6 cut(s)	198, 220, 310, 314, 340, 362
CviKI_1	RGCY	6 cut(s)	198, 220, 310, 314, 340, 362
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	3 cut(s)	45, 239, 320
DpnII	GATC	3 cut(s)	43, 237, 318
DraI	TTTAAA	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	240, 314
FaeI	CATG	2 cut(s)	27, 191
FaiI	YATR	9 cut(s)	25, 78, 98, 100, 114, 164, 189, 300, 416
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	2 cut(s)	23, 187
Fnu4HI	GCNGC	2 cut(s)	89, 117
Fsp4HI	GCNGC	2 cut(s)	89, 117
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	2 cut(s)	89, 117
HapII	CCGG	1 cut(s)	381
Hin1II	CATG	2 cut(s)	27, 191
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	3 cut(s)	31, 256, 418
Hpy166II	GTNNAC	2 cut(s)	266, 272
Hpy188I	TCNGA	4 cut(s)	43, 160, 390, 402
Hpy8I	GTNNAC	2 cut(s)	266, 272
HpyAV	CCTTC	2 cut(s)	397, 420
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	31, 268
HpyCH4V	TGCA	4 cut(s)	27, 116, 212, 356
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	2 cut(s)	31, 268
Hsp92II	CATG	2 cut(s)	27, 191
KpnI	GGTACC	1 cut(s)	422
Kzo9I	GATC	3 cut(s)	43, 237, 318
LpnPI	CCDG	7 cut(s)	24, 51, 227, 254, 301, 328, 394
Lsp1109I	GCAGC	2 cut(s)	75, 128
LweI	GCATC	2 cut(s)	199, 240
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	2 cut(s)	31, 268
MaeIII	GTNAC	2 cut(s)	19, 406
MalI	GATC	3 cut(s)	45, 239, 320
MboI	GATC	3 cut(s)	43, 237, 318
MboII	GAAGA	2 cut(s)	81, 405
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	2 cut(s)	37, 371
MnlI	CCTC	2 cut(s)	49, 149
MseI	TTAA	2 cut(s)	35, 174
MslI	CAYNNNNRTG	1 cut(s)	176
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	2 cut(s)	242, 316
MvaI	CCWGG	2 cut(s)	242, 316
NdeII	GATC	3 cut(s)	43, 237, 318
NheI	GCTAGC	1 cut(s)	310
NlaIII	CATG	2 cut(s)	27, 191
NlaIV	GGNNCC	2 cut(s)	185, 420
NmuCI	GTSAC	2 cut(s)	19, 406
NspI	RCATGY	1 cut(s)	27
PinAI	ACCGGT	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	90, 118
Ppu21I	YACGTR	1 cut(s)	269
Psp1406I	AACGTT	1 cut(s)	31
Psp6I	CCWGG	2 cut(s)	240, 314
PspGI	CCWGG	2 cut(s)	240, 314
PspN4I	GGNNCC	2 cut(s)	185, 420
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	35, 174
SatI	GCNGC	2 cut(s)	89, 117
Sau3AI	GATC	3 cut(s)	43, 237, 318
ScrFI	CCNGG	2 cut(s)	242, 316
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	7 cut(s)	21, 34, 86, 246, 271, 408, 431
SfaNI	GCATC	2 cut(s)	199, 240
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	37, 371
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	2 cut(s)	240, 314
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	34, 271
TaqI	TCGA	1 cut(s)	321
TasI	AATT	2 cut(s)	37, 371
Tru1I	TTAA	2 cut(s)	35, 174
Tru9I	TTAA	2 cut(s)	35, 174
TseFI	GTSAC	2 cut(s)	19, 406
TseI	GCWGC	2 cut(s)	88, 116
Tsp45I	GTSAC	2 cut(s)	19, 406
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	1 cut(s)	27
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.