RchiOBHm_Chr2g0146991

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0024875
Physical Location & Seq
Reverse (-)
64663272 .. 64663999
728 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51666

Sequence Viewer

Length: 177 bp
ATGCTCAAGGGCTCTGCGGTAGAGGTTCGCCAAAAATTTGAGGAGAATAGGGGTGTGACATCAGAGGAGGAGGTCCAGAGACTGCTTGGCGAGGCATACGAGGCCTCCAGCTTCATCTCCACCATGATCGTCCAGGCCAAGCTCAATTCCGGCGGAGGCTACATTTTTCATTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

58

Amino Acids

6.41

Weight (kDa)

5.23

Isoelectric Point (pI)

28.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 7 - 35 6.4e-06 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024875)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0146991
rosa_multiflora Rmu_co8299793.1_g000001
rosa_samantha Rh2CG442200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 17, 153
AcsI RAATTY 1 cut(s) 35
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 2 cut(s) 111, 142
AluI AGCT 2 cut(s) 111, 142
Alw26I GTCTC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 82
AoxI GGCC 2 cut(s) 102, 135
ApoI RAATTY 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 73
AvaII GGWCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
BseBI CCWGG 1 cut(s) 134
BseRI GAGGAG 3 cut(s) 56, 80, 83
BshFI GGCC 2 cut(s) 104, 137
BsiSI CCGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 2 cut(s) 104, 137
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 2 cut(s) 17, 153
BspANI GGCC 2 cut(s) 104, 137
BssMI GATC 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 134
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 132
BsuRI GGCC 2 cut(s) 104, 137
CaiI CAGNNNCTG 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 73
CviAII CATG 1 cut(s) 124
CviJI RGCY 6 cut(s) 12, 104, 111, 137, 142, 159
CviKI_1 RGCY 6 cut(s) 12, 104, 111, 137, 142, 159
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
EciI GGCGGA 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 14
FaeI CATG 1 cut(s) 127
FaiI YATR 2 cut(s) 97, 125
FatI CATG 1 cut(s) 123
FriOI GRGCYC 1 cut(s) 14
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 2 cut(s) 104, 137
HapII CCGG 1 cut(s) 150
Hin1II CATG 1 cut(s) 127
HpaII CCGG 1 cut(s) 150
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
Hsp92II CATG 1 cut(s) 127
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 5 cut(s) 89, 119, 121, 146, 163
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 2 cut(s) 35, 145
MnlI CCTC 9 cut(s) 16, 34, 58, 61, 64, 85, 94, 115, 149
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 1 cut(s) 126
NlaIII CATG 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 55
PceI AGGCCT 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspPI GGNCC 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 82
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 14
SetI ASST 4 cut(s) 27, 75, 113, 144
SinI GGWCC 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 2 cut(s) 35, 145
SseBI AGGCCT 1 cut(s) 104
SsiI CCGC 2 cut(s) 17, 153
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 132
TasI AATT 2 cut(s) 35, 145
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 103, 158
VpaK11BI GGWCC 1 cut(s) 73
XapI RAATTY 1 cut(s) 35
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.