Rh2CG442200

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0024875
Physical Location & Seq
Reverse (-)
59892839 .. 59893015
177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG442200.1

Sequence Viewer

Length: 177 bp
ATGCTCAAGGGCTCAGCGGCAGAGATTCGCCAGAAATTCGAGGAGAATAGGGGCGTGACATCAGAGGAGGATATCCAGAGACTGCTTGGTGAGGCATGCGAGGCCTCCAGCTTCATCTCCACCATGATCATCCAGACCAAGCTCAATTCCGGCGGAGGCTACATTTTTCATTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

58

Amino Acids

6.38

Weight (kDa)

5.19

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 6 - 35 4.2e-06 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024875)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0146991
rosa_multiflora Rmu_co8299793.1_g000001
rosa_samantha Rh2CG442200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 17, 153
AcsI RAATTY 1 cut(s) 35
AluBI AGCT 2 cut(s) 111, 142
AluI AGCT 2 cut(s) 111, 142
Alw26I GTCTC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 82
AoxI GGCC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 101
BanII GRGCYC 1 cut(s) 14
BclI TGATCA 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 73
BisI GCNGC 1 cut(s) 18
BlpI GCTNAGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 91
Bpu1102I GCTNAGC 1 cut(s) 13
BseGI GGATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 27
BseRI GAGGAG 2 cut(s) 56, 80
BshFI GGCC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 126
Bsp1720I GCTNAGC 1 cut(s) 13
BspACI CCGC 2 cut(s) 17, 153
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 26
BssMI GATC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 13
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 99
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 97
CaiI CAGNNNCTG 1 cut(s) 82
CviAII CATG 2 cut(s) 96, 124
CviJI RGCY 5 cut(s) 12, 104, 111, 142, 159
CviKI_1 RGCY 5 cut(s) 12, 104, 111, 142, 159
DdeI CTNAG 1 cut(s) 13
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
EciI GGCGGA 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 14
Eco32I GATATC 1 cut(s) 73
EcoRV GATATC 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 14
FaeI CATG 2 cut(s) 99, 127
FaiI YATR 2 cut(s) 97, 125
FatI CATG 2 cut(s) 95, 123
FbaI TGATCA 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 150
Hin1II CATG 2 cut(s) 99, 127
HinfI GANTC 1 cut(s) 25
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 101
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 76, 133
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 13
Hsp92II CATG 2 cut(s) 99, 127
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 5 cut(s) 44, 89, 121, 146, 163
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 2 cut(s) 35, 145
MnlI CCTC 7 cut(s) 34, 58, 61, 85, 94, 115, 149
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 1 cut(s) 126
NlaIII CATG 2 cut(s) 99, 127
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 99
PaeI GCATGC 1 cut(s) 99
PceI AGGCCT 1 cut(s) 104
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 19
PstNI CAGNNNCTG 1 cut(s) 82
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 1 cut(s) 126
SduI GDGCHC 1 cut(s) 14
SetI ASST 2 cut(s) 113, 144
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SphI GCATGC 1 cut(s) 99
Sse9I AATT 2 cut(s) 35, 145
SseBI AGGCCT 1 cut(s) 104
SsiI CCGC 2 cut(s) 17, 153
StuI AGGCCT 1 cut(s) 104
TaqI TCGA 1 cut(s) 39
TasI AATT 2 cut(s) 35, 145
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 1 cut(s) 25
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 103, 158
XapI RAATTY 1 cut(s) 35
XceI RCATGY 1 cut(s) 99
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.