Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019892

Physical Location & Seq

Genomic Coordinates Forward (+)

67837711 .. 67838562

Gene Structure 852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51941

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGATAGCAGCCTATCTGAGCCTTTATTAGCCAAAACTAAATTAGACCAAGCCAGCTTCCTTAGCAAACTGACACTTTCTTGGGTCAATCCTCTCCTTAAGTTGGGTTCCTCGAGAGCATTAGATCTCGAAGACATCCCTTCTCTGGTTTCTGAAGACGAAGCAAATGTAGCATACCAGAAGTTTTCTAATGCATTGGAGTCCCTCTCGAGGGAGAAGAGCTCAAGTAGTATGTCGAGGAACTTGGTTATTCTCAGAGCCATGGCAAGAGTTTACATGAAGGAAAATGTACACTGGTTTTTTGACTCAAGAAGGTCTGGCATGAGAATGAGGTCAGCCTTGATGGTTGCAGTCTATCAAAAGCAGCTGAAGCTTTCTAGTTTGGGAAGGAGAAAGCACTCAGCTGGAGAGATTGTGAATTACATAGCAGTGGATGCTTATCGAATGGGGGAGTTCCTATGGTGGTTTCATTCGACATGGAGTCTTTCGTTGCAACTATTGCTTTCCATTGTTGTACTTTATGTGGTCGCGGGTGTTGGTGCTCCACCTGGTTTAGTTCCTCTTATCATGTTTGGTCTTCTGAATGTGCCATTTGCTAAGGTACTTCAGAAGTGTCAGTCTGAGTTCATGGTAGCTCAGGATGAAAGGCTTAGAGCCACCTCTGAACAGCATGAAAATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

227

Amino Acids

25.64

Weight (kDa)

9.35

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	104 - 226	4.5e-12	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0019892)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150051
rosa_multiflora	Rmu_co8250751.1_g000001 Rmu_sc0001169.1_g000007 Rmu_sc0009445.1_g000016
rosa_samantha	Rh2BG489600 Rh2BG489700 Rh2DG498500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	530
AciI	CCGC	1 cut(s)	530
AcuI	CTGAAG	3 cut(s)	174, 389, 590
AfaI	GTAC	3 cut(s)	291, 516, 603
AfiI	CCNNNNNNNGG	4 cut(s)	103, 145, 210, 211
AflII	CTTAAG	1 cut(s)	98
AhdI	GACNNNNNGTC	1 cut(s)	480
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	6 cut(s)	57, 222, 367, 373, 404, 635
AluI	AGCT	6 cut(s)	57, 222, 367, 373, 404, 635
Alw21I	GWGCWC	2 cut(s)	224, 544
Ama87I	CYCGRG	2 cut(s)	112, 208
ApeKI	GCWGC	2 cut(s)	9, 364
AvaI	CYCGRG	2 cut(s)	112, 208
BanII	GRGCYC	1 cut(s)	224
BbsI	GAAGAC	3 cut(s)	138, 162, 569
Bbv12I	GWGCWC	2 cut(s)	224, 544
BbvI	GCAGC	2 cut(s)	21, 376
BccI	CCATC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	549
BfaI	CTAG	1 cut(s)	378
BfrI	CTTAAG	1 cut(s)	98
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	2 cut(s)	10, 365
BlsI	GCNGC	2 cut(s)	11, 366
Bme1390I	CCNGG	1 cut(s)	549
BmeRI	GACNNNNNGTC	1 cut(s)	480
BmeT110I	CYCGRG	2 cut(s)	112, 208
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	549
BmsI	GCATC	1 cut(s)	424
BpiI	GAAGAC	3 cut(s)	138, 162, 569
BplI	GAGNNNNNCTC	4 cut(s)	191, 223, 206, 238
BpmI	CTGGAG	1 cut(s)	426
Bpu10I	CCTNAGC	3 cut(s)	62, 597, 636
BpuEI	CTTGAG	2 cut(s)	208, 292
BsaBI	GATNNNNATC	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 145, 210, 211
Bse1I	ACTGG	1 cut(s)	299
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	3 cut(s)	135, 439, 646
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	4 cut(s)	103, 145, 210, 211
BseMII	CTCAG	5 cut(s)	9, 268, 414, 612, 650
BseNI	ACTGG	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	21, 376
Bsh1236I	CGCG	1 cut(s)	530
BsiHKAI	GWGCWC	2 cut(s)	224, 544
BsiHKCI	CYCGRG	2 cut(s)	112, 208
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	4 cut(s)	103, 145, 210, 211
BsmFI	GGGAC	1 cut(s)	187
BsoBI	CYCGRG	2 cut(s)	112, 208
Bsp1286I	GDGCHC	2 cut(s)	224, 544
Bsp1407I	TGTACA	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	124
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	1 cut(s)	530
BspCNI	CTCAG	5 cut(s)	10, 267, 413, 613, 649
BspFNI	CGCG	1 cut(s)	530
BspLI	GGNNCC	1 cut(s)	109
BspQI	GCTCTTC	1 cut(s)	212
BspTI	CTTAAG	1 cut(s)	98
BsrGI	TGTACA	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	124
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	549
Bst6I	CTCTTC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	98
BstAPI	GCANNNNNTGC	2 cut(s)	434, 499
BstAUI	TGTACA	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	8 cut(s)	18, 62, 254, 400, 597, 621, 636, 650
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	3 cut(s)	135, 439, 646
BstFNI	CGCG	1 cut(s)	530
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 170, 370, 434, 499
BstNI	CCWGG	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	547
BstUI	CGCG	1 cut(s)	530
BstV1I	GCAGC	2 cut(s)	21, 376
BstV2I	GAAGAC	3 cut(s)	138, 162, 569
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	3 cut(s)	135, 439, 646
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	2 cut(s)	292, 435
Cac8I	GCNNGC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	547
Csp6I	GTAC	3 cut(s)	290, 515, 602
CviAII	CATG	7 cut(s)	262, 277, 322, 477, 568, 628, 671
CviQI	GTAC	3 cut(s)	290, 515, 602
DdeI	CTNAG	8 cut(s)	18, 62, 254, 400, 597, 621, 636, 650
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
DriI	GACNNNNNGTC	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	212
Eam1105I	GACNNNNNGTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	222
Eco57I	CTGAAG	3 cut(s)	174, 389, 590
Eco88I	CYCGRG	2 cut(s)	112, 208
EcoICRI	GAGCTC	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	7 cut(s)	265, 280, 325, 480, 571, 631, 674
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	7 cut(s)	261, 276, 321, 476, 567, 627, 670
FauI	CCCGC	1 cut(s)	523
Fnu4HI	GCNGC	2 cut(s)	10, 365
FokI	GGATG	3 cut(s)	122, 446, 653
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	10, 365
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	2 cut(s)	10, 365
GsuI	CTGGAG	1 cut(s)	426
Hin1II	CATG	7 cut(s)	265, 280, 325, 480, 571, 631, 674
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	3 cut(s)	200, 305, 481
Hpy166II	GTNNAC	2 cut(s)	274, 292
Hpy188I	TCNGA	7 cut(s)	19, 154, 257, 582, 609, 622, 664
Hpy188III	TCNNGA	5 cut(s)	114, 128, 208, 309, 638
Hpy8I	GTNNAC	2 cut(s)	274, 292
HpyAV	CCTTC	4 cut(s)	150, 274, 306, 381
HpyCH4V	TGCA	3 cut(s)	194, 350, 493
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 170, 370, 434, 499
HpyF3I	CTNAG	8 cut(s)	18, 62, 254, 400, 597, 621, 636, 650
Hsp92II	CATG	7 cut(s)	265, 280, 325, 480, 571, 631, 674
Kzo9I	GATC	1 cut(s)	124
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	547
LpnPI	CCDG	9 cut(s)	67, 131, 191, 280, 303, 390, 534, 561, 623
Lsp1109I	GCAGC	2 cut(s)	21, 376
LweI	GCATC	1 cut(s)	424
MabI	ACCWGGT	1 cut(s)	547
MaeI	CTAG	1 cut(s)	378
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	4 cut(s)	143, 167, 229, 569
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	2 cut(s)	224, 544
MluCI	AATT	2 cut(s)	41, 418
MlyI	GAGTC	3 cut(s)	209, 299, 490
MnlI	CCTC	8 cut(s)	102, 121, 204, 215, 231, 324, 570, 670
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	2 cut(s)	99, 682
MslI	CAYNNNNRTG	2 cut(s)	326, 428
MspA1I	CMGCKG	2 cut(s)	367, 404
MspCI	CTTAAG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	549
MvnI	CGCG	1 cut(s)	530
MwoI	GCNNNNNNNGC	5 cut(s)	63, 170, 370, 434, 499
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	7 cut(s)	265, 280, 325, 480, 571, 631, 674
NlaIV	GGNNCC	1 cut(s)	109
NsiI	ATGCAT	1 cut(s)	196
PaeR7I	CTCGAG	2 cut(s)	112, 208
PciSI	GCTCTTC	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	11, 366
PleI	GAGTC	3 cut(s)	208, 299, 489
PpsI	GAGTC	3 cut(s)	208, 299, 489
Psp124BI	GAGCTC	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	124
PvuII	CAGCTG	2 cut(s)	367, 404
RsaI	GTAC	3 cut(s)	291, 516, 603
RsaNI	GTAC	3 cut(s)	290, 515, 602
RseI	CAYNNNNRTG	2 cut(s)	326, 428
SacI	GAGCTC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	99, 682
SatI	GCNGC	2 cut(s)	10, 365
Sau3AI	GATC	1 cut(s)	124
SchI	GAGTC	3 cut(s)	209, 299, 490
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	2 cut(s)	224, 544
SexAI	ACCWGGT	1 cut(s)	547
SfaNI	GCATC	1 cut(s)	424
Sfr274I	CTCGAG	2 cut(s)	112, 208
SlaI	CTCGAG	2 cut(s)	112, 208
SmiMI	CAYNNNNRTG	2 cut(s)	326, 428
SmlI	CTYRAG	5 cut(s)	98, 112, 208, 223, 307
SmoI	CTYRAG	5 cut(s)	98, 112, 208, 223, 307
Sse9I	AATT	2 cut(s)	41, 418
SsiI	CCGC	1 cut(s)	530
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	1 cut(s)	261
TaqI	TCGA	6 cut(s)	113, 129, 209, 236, 442, 473
TasI	AATT	2 cut(s)	41, 418
TatI	WGTACW	2 cut(s)	289, 514
Tru1I	TTAA	2 cut(s)	99, 682
Tru9I	TTAA	2 cut(s)	99, 682
TscAI	CASTG	2 cut(s)	299, 435
TseI	GCWGC	2 cut(s)	9, 364
TspDTI	ATGAA	4 cut(s)	293, 458, 616, 657
TspRI	CASTG	2 cut(s)	299, 435
Vha464I	CTTAAG	1 cut(s)	98
XhoI	CTCGAG	2 cut(s)	112, 208
XspI	CTAG	1 cut(s)	378
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.