Rh2BG489700

ABC transporter C family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0019892
Physical Location & Seq
Forward (+)
68943578 .. 68943919
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG489700.1

Sequence Viewer

Length: 342 bp
ATGGTTGCAGTCTATCAAAAGCAGCTGAAGCTTTCTAGTTTGGGAAGGAGAAAGCACTCAGCTGGAGAGATTGTGAATTACATAGCAGTGGATGCTTATCGAATGGGGGAGTTCCTATGGTGGTTTCATTCGACATGGAGTCTTTCGTTGCAACTATTGCTTTCCATTGTTGTACTTTATGTGGTCGCGGGTGTTGGTGCTCCACCTGGTTTAGTTCCTCTTATCAGGTTTGGTCTTCTGAATGTGCCATTTGCTAAGGTACTTCAGAAGTGTCAGTCTGAGTTCATGGTAGCTCAGGATGAAAGGCTTAGAGCCACCTCTGAACAGCATGAAAATCATTAA

Protein Analysis

113

Amino Acids

12.8

Weight (kDa)

9.25

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 7 - 112 4.7e-09 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019892)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0150051
rosa_multiflora Rmu_co8250751.1_g000001 Rmu_sc0001169.1_g000007 Rmu_sc0009445.1_g000016
rosa_samantha Rh2BG489600 Rh2BG489700 Rh2DG498500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 188
AciI CCGC 1 cut(s) 188
AcuI CTGAAG 2 cut(s) 47, 248
AfaI GTAC 2 cut(s) 174, 261
AhdI GACNNNNNGTC 1 cut(s) 138
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 4 cut(s) 25, 31, 62, 293
AluI AGCT 4 cut(s) 25, 31, 62, 293
Alw21I GWGCWC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 207
BfaI CTAG 1 cut(s) 36
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 207
BmeRI GACNNNNNGTC 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 227
BpmI CTGGAG 1 cut(s) 84
Bpu10I CCTNAGC 2 cut(s) 255, 294
BsaBI GATNNNNATC 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bse8I GATNNNNATC 1 cut(s) 96
BseBI CCWGG 1 cut(s) 207
BseGI GGATG 2 cut(s) 97, 304
BseJI GATNNNNATC 1 cut(s) 96
BseMII CTCAG 3 cut(s) 72, 270, 308
BseXI GCAGC 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 202
BspACI CCGC 1 cut(s) 188
BspCNI CTCAG 3 cut(s) 71, 271, 307
BspFNI CGCG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 207
BstAPI GCANNNNNTGC 2 cut(s) 92, 157
BstDEI CTNAG 5 cut(s) 58, 255, 279, 294, 308
BstF5I GGATG 2 cut(s) 97, 304
BstFNI CGCG 1 cut(s) 188
BstMWI GCNNNNNNNGC 3 cut(s) 28, 92, 157
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 34
BstV2I GAAGAC 1 cut(s) 227
BtsCI GGATG 2 cut(s) 97, 304
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
CsiI ACCWGGT 1 cut(s) 205
Csp6I GTAC 2 cut(s) 173, 260
CviAII CATG 3 cut(s) 135, 286, 329
CviJI RGCY 6 cut(s) 25, 31, 62, 293, 307, 314
CviKI_1 RGCY 6 cut(s) 25, 31, 62, 293, 307, 314
CviQI GTAC 2 cut(s) 173, 260
DdeI CTNAG 5 cut(s) 58, 255, 279, 294, 308
DriI GACNNNNNGTC 1 cut(s) 138
Eam1105I GACNNNNNGTC 1 cut(s) 138
Eco57I CTGAAG 2 cut(s) 47, 248
EcoRII CCWGG 1 cut(s) 205
FaeI CATG 3 cut(s) 138, 289, 332
FaiI YATR 6 cut(s) 83, 118, 136, 180, 287, 330
FatI CATG 3 cut(s) 134, 285, 328
FauI CCCGC 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 2 cut(s) 104, 311
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 1 cut(s) 36
GluI GCNGC 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 84
Hin1II CATG 3 cut(s) 138, 289, 332
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 1 cut(s) 139
Hpy188I TCNGA 4 cut(s) 240, 267, 280, 322
Hpy188III TCNNGA 1 cut(s) 296
HpyAV CCTTC 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 8, 151
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 92, 157
HpyF3I CTNAG 5 cut(s) 58, 255, 279, 294, 308
Hsp92II CATG 3 cut(s) 138, 289, 332
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 5 cut(s) 48, 192, 211, 219, 281
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 82
MabI ACCWGGT 1 cut(s) 205
MaeI CTAG 1 cut(s) 36
MboII GAAGA 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 1 cut(s) 76
MlyI GAGTC 1 cut(s) 148
MnlI CCTC 2 cut(s) 228, 328
MseI TTAA 1 cut(s) 340
MslI CAYNNNNRTG 1 cut(s) 86
MspA1I CMGCKG 2 cut(s) 25, 62
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 3 cut(s) 28, 92, 157
NlaIII CATG 3 cut(s) 138, 289, 332
PkrI GCNGC 1 cut(s) 24
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PvuII CAGCTG 2 cut(s) 25, 62
RsaI GTAC 2 cut(s) 174, 261
RsaNI GTAC 2 cut(s) 173, 260
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 1 cut(s) 340
SatI GCNGC 1 cut(s) 23
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 202
SetI ASST 8 cut(s) 27, 33, 64, 208, 230, 261, 295, 320
SexAI ACCWGGT 1 cut(s) 205
SfaNI GCATC 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 86
Sse9I AATT 1 cut(s) 76
SsiI CCGC 1 cut(s) 188
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 205
TaqI TCGA 2 cut(s) 100, 131
TasI AATT 1 cut(s) 76
TatI WGTACW 1 cut(s) 172
Tru1I TTAA 1 cut(s) 340
Tru9I TTAA 1 cut(s) 340
TscAI CASTG 1 cut(s) 93
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 3 cut(s) 116, 274, 315
TspRI CASTG 1 cut(s) 93
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.