Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8250751.1

Orthogroup ID

OG0019892

Physical Location & Seq

Genomic Coordinates Forward (+)

319 .. 687

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8250751.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atggatagcagcctatctgagcctttattagccaaaactaaattagaccaagccagcttccttagcaaactgacactttcttgggtcaatcctctccttaagttgggttcctcgagagcattagatctcgaagacatcccttctctggtttctgaagacgaagcaaatgtagcataccagaagttttctaatgcattggagtccctctcgagggagaagagctcaagtagtatgtcgaggaacttggttattctcagagccatggcaagagtttacatgaaggaaaatgtgttgataatcatttgtgcattcctcaagaccattgctgttgtagtttctcctcttatactctatgcttttgtaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

122

Amino Acids

13.48

Weight (kDa)

7.82

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019892)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150051
rosa_multiflora	Rmu_co8250751.1_g000001 Rmu_sc0001169.1_g000007 Rmu_sc0009445.1_g000016
rosa_samantha	Rh2BG489600 Rh2BG489700 Rh2DG498500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	174
AfiI	CCNNNNNNNGG	4 cut(s)	103, 145, 210, 211
AflII	CTTAAG	1 cut(s)	98
AluBI	AGCT	2 cut(s)	57, 222
AluI	AGCT	2 cut(s)	57, 222
Alw21I	GWGCWC	1 cut(s)	224
Ama87I	CYCGRG	2 cut(s)	112, 208
ApeKI	GCWGC	1 cut(s)	9
AvaI	CYCGRG	2 cut(s)	112, 208
BanII	GRGCYC	1 cut(s)	224
BbsI	GAAGAC	2 cut(s)	138, 162
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	21
BfrI	CTTAAG	1 cut(s)	98
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
BmeT110I	CYCGRG	2 cut(s)	112, 208
BmiI	GGNNCC	1 cut(s)	109
BpiI	GAAGAC	2 cut(s)	138, 162
BplI	GAGNNNNNCTC	4 cut(s)	191, 223, 206, 238
Bpu10I	CCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	2 cut(s)	208, 299
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 145, 210, 211
Bse3DI	GCAATG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	4 cut(s)	103, 145, 210, 211
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	9, 268
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	224
BsiHKCI	CYCGRG	2 cut(s)	112, 208
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	4 cut(s)	103, 145, 210, 211
BsmFI	GGGAC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	308
BsoBI	CYCGRG	2 cut(s)	112, 208
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	124
Bsp19I	CCATGG	1 cut(s)	261
BspCNI	CTCAG	2 cut(s)	10, 267
BspLI	GGNNCC	1 cut(s)	109
BspQI	GCTCTTC	1 cut(s)	212
BspTI	CTTAAG	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	124
BssT1I	CCWWGG	1 cut(s)	261
Bst6I	CTCTTC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	3 cut(s)	18, 62, 254
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	135
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 170
BstV1I	GCAGC	1 cut(s)	21
BstV2I	GAAGAC	2 cut(s)	138, 162
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	55
CviAII	CATG	2 cut(s)	262, 277
CviJI	RGCY	7 cut(s)	12, 22, 32, 53, 57, 222, 260
CviKI_1	RGCY	7 cut(s)	12, 22, 32, 53, 57, 222, 260
DdeI	CTNAG	3 cut(s)	18, 62, 254
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	174
Eco88I	CYCGRG	2 cut(s)	112, 208
EcoICRI	GAGCTC	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	2 cut(s)	265, 280
FaiI	YATR	6 cut(s)	175, 233, 263, 278, 347, 354
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	2 cut(s)	261, 276
Fnu4HI	GCNGC	1 cut(s)	10
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	10
GluI	GCNGC	1 cut(s)	10
Hin1II	CATG	2 cut(s)	265, 280
HinfI	GANTC	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	274, 364
Hpy188I	TCNGA	3 cut(s)	19, 154, 257
Hpy188III	TCNNGA	4 cut(s)	114, 128, 208, 316
Hpy8I	GTNNAC	2 cut(s)	274, 364
HpyAV	CCTTC	2 cut(s)	150, 274
HpyCH4V	TGCA	2 cut(s)	194, 308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 170
HpyF3I	CTNAG	3 cut(s)	18, 62, 254
Hsp92II	CATG	2 cut(s)	265, 280
Kzo9I	GATC	1 cut(s)	124
LguI	GCTCTTC	1 cut(s)	212
LpnPI	CCDG	3 cut(s)	67, 131, 191
Lsp1109I	GCAGC	1 cut(s)	21
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	3 cut(s)	143, 167, 229
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	7 cut(s)	102, 121, 204, 215, 231, 323, 351
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	1 cut(s)	99
MspCI	CTTAAG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	63, 170
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	265, 280
NlaIV	GGNNCC	1 cut(s)	109
NsiI	ATGCAT	1 cut(s)	196
PaeR7I	CTCGAG	2 cut(s)	112, 208
PciSI	GCTCTTC	1 cut(s)	212
PctI	GAATGC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	11
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp124BI	GAGCTC	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	124
SacI	GAGCTC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	1 cut(s)	10
Sau3AI	GATC	1 cut(s)	124
SchI	GAGTC	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	2 cut(s)	59, 224
Sfr274I	CTCGAG	2 cut(s)	112, 208
SlaI	CTCGAG	2 cut(s)	112, 208
SmlI	CTYRAG	5 cut(s)	98, 112, 208, 223, 314
SmoI	CTYRAG	5 cut(s)	98, 112, 208, 223, 314
Sse9I	AATT	1 cut(s)	41
SstI	GAGCTC	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	261
TaqI	TCGA	4 cut(s)	113, 129, 209, 236
TasI	AATT	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseI	GCWGC	1 cut(s)	9
TspDTI	ATGAA	1 cut(s)	293
Vha464I	CTTAAG	1 cut(s)	98
XhoI	CTCGAG	2 cut(s)	112, 208
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.