RchiOBHm_Chr2g0152361

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0024188
Physical Location & Seq
Reverse (-)
69775824 .. 69785404
9581 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52151

Sequence Viewer

Length: 4110 bp
ATGAGCAGCAACCGACTGAGAAAAGTGATTTCGGCGACGTTGCTCTGCGGAGGCGGTTCGTCTCCTACTCCGTCGGAGCGCCGGGAGTTGAACGAAGCACTCAACGAGTCTATCACTTCATTTCAGTCCCTCTTGGCTTTTACGGGTCCATCGGACTCTTCTCGTGCAGAGCTGGATGAAATTGAAATGCCCGATTCACTTAATAACGATGAGGACATTGAAATGGTTTTGGATATGAGTGATGAACTGCATCTCAATGTGACTCATTGTGTCCGTTTGATTCAGTCTGCACATCTAGAGTGGGCTTCCATCGGAGGAGCTCCTCAAGACATTTTGAAGCATGCAATACGGCTGTGGTTTAAGGAGAGGAGGGAAATTCTGGAAGATTTGTATACTTTGTTGAGGGAACTTAATCGAGAAGAGCCAGCTGACCTGGTTGGGCCTCATTCTGAACCATGTGTTCTTGATTCTAGTGGAGTTCTCGTCCGGCGGGAAGATGTACTGTCCTTGGAAAAGCTCATACTTGGGCATTGCCTTTGCCTTTCGACACTGGTTGTTGGCTCAAATTGTTTGTCTTATCTTGGCCACCGGACAACACGACATCAGGTTGCTGTTAGTCTTCTTTTCTCTATTGTGATCGCATTTGTATCAGGTTCTCCAAATGCATCTATAGTGACACTGGAAGATTCATTCAAAAATGAATTTCATGAAATTGTAATGGCCACCGGATGTGATCCAAATGTTGAGGGCTTTATTGGCTGCATAAGATTAGCTTGGGCAGCGCACATGATAGTCACACAAGATTTGGATCACCTGGATTCTTGTTTGGAGCTAGTTTTTCAGAAGAATGTATTCCAGTTTATATCAGATGGAATTCTTGGTACTGCAGCATATCAGAACCATGATGATGAGGATATGAGCTATATATACAACATTTATTTTGGCAAGCTGATCACCTGCTTGGTATCTCACCCACTTTCCCTACAAAGGGTCAGACAATCAAAGGACATGGCTATAACATCACAAGGTCGTGAAACTGGCCCTTTACCATTTCTCTCTCTCTTGGGACTGGTGGGAAAAATCTATGAGAAGAATCAAGAGCTGTTGTCTGGCAATTATGTGTTGTGGACATTTGTGAATATGGTTGGAGAGGGATCTTTAAATTTTCAAACCCGTGTGGCTTTCTTGAATATGCTGAGTTCATTGGCCTCTAGTCAAGAAAGCACTTCAAAGGTTTTTGAATTACTTAGGTGGCGTGATGAGTTTGAAACATTCTTTGCTCACTTAACAAGTTATCATGCTCGCTTCTTACAACTAGCAGAGGAAGAGGGAAAAGAACTTGCTTCGTATTTGAATATTCTTCAAAAGGTTGTGGAACATGGAAACCTCCTTGAATTAAACTCGTTTGCTTACGTAGAACCTTTATTCAAGCTCCTTCTCTCTGGTGCGCCTCCTTATGTGAAGGGTGCCTTATTGGGGGCAATAAAAGCCTTTGTACACGTCTCCCCAGTCCTAAAAGATGAAATTTGGGAGAAACTTGAGGAGTATGGGAAGAGTGGATATATGCTACGGGTATATGATATGCAATTTGAGCTGAATGAAGTAGAAGCAATGATTCAGAACTATCCTTCGACGATATCATTCCTTGACCTGTTAAACACTCTTCTTCTGGAAGAAAGAGACTTGGATTGTCTAAAGCAAAGCTGTGTTGCAATTTTCTTTTGGTTCATTTATAATGATGTTTTCCGGTTATTCCCTCAAAGAGCGTATACAGATCCTTTTCAGAAATGGCAGCTGGTAGTTGCTTGCCTCCAGCATTTTCACACGATTTTGCGTCTGTATGACATCTCTGAGGAGGGCATCAACAGTGACCTTGTCAATTCTCAGCGTTCAACAGTAATACCCATAGTAGAATTTCTAGAAAAGAACATCATTGGATTCCTTCTTTTCTACATGTTGTTACAGGATTTCACAAGTGGAAATACTGTTTTCCAAAACATTATGTGTATTCTTTTGCCGGGTGTCAATGAGCTTATGTCTGAGAGGACAAATCAATTGTATGGGAAACTTTTGGAGAAGGCAGTCCAACTGTCTATGGAAATTATAGTCCTTGTATTAGAGAAGGATTTGCTTGCAGTTTACCAGTGGCGACTGTTGGAAGTTATGCTCTCTCTAGACTTCAATCAAATTTTAGCTCTGTTGGAGTATGTCGGATATTATTTTGAACCACAAATTCAGCTGTGCTCTATCAAGATCATGTCTATATTGAGTTCTCGCGTGGATGGCTTCGTGGAGTTACTGCTAAGATCCAATGCTGCAATATCTTTGATTGGAAAGTATGCAGCCTGCCTAGAATTACGCTCAGAAGTTTGTAAGTCCCTTGATGATGCAAGTGAACCAGCTATACTGATAATGAAGCTTCTAGAAGACAATATAAGCCAACCAGCTCCCAATATCACTCATTTTCTGCTCCATTTTGATCTTGAGAGTCCTACTGGACAGTTTGTGTTACAACCAAAATTTCCTCACAGTTGTTTGAAAGTTATTCTTGAAATTCTGGACAAGCTTTCAAAGCCTAAAGTAAATATGTCACTTCATGAATCTGGGTTTAAGCTCCTTTATAAGTTGTGCTCGGATGCTAAGACACACGATTCTATGATGAAGCTGCTGAGGGGTAAAGAGTATCTGTTCTTTGCAAAGCACCTAGATACAATTGGCGTTTGCCCTCTTCCTGAAGAACATTCCCTGTGCATCAGTTCCCTTCACCAGAGAACTTGGCTGTTGAAACTATTAGCTGTTGAACTTTATGTTGGCGATGTCAATGGATCCACTGATCTAGAAGCATGTGATAGCATTCTTGAGCATCTTTTTGGGCATGCAAATGTCGAAAATACCAAGAGTAAGGTCTTGGAGTTACTTGAGATAGTCCAATCTGGTTTGCGGGATACCAGCATGGACGTAAATGCAAACCTTGATATGTTCAAGGCCTGGTCAGACATTATTGAGATCTCTGCTTTGAGAAGGATATCATCACTTGGACAACGAACTGAAGTTCTATATCAGATTATTGTTGTTACTCTGACTACTTACCCTGCCTGTAACGACAAGATGAGAGAGGGATTGTGCAGGGTTGCACTGACTTGCATGATCAAATTAAGAGATGAGAGATTTTTATTTCCTGATGACGACCTGTTAAAGCATATATTGAAAATTTTTGAACATAGATCATCAGAATCCTTAATAGTACGGCAATATGGTTTACTTCTTAGCTTTTTCCAGTACTGTCAAAATGCACTCGATCCAGATATTGAGATTGATCCGCCGGATCCAGATAGGCTGATGAACCAAGAACGAGCAGACGCATTGGCAGAGTTTGCTCTTACTAATTTCTCTATATTAAGGAAAGAAGCTCAACCTATTCTGGATTTGGTAATAAGTGATGCGAGTCAAGGAAGTGAAAAGATGAAAACGATGTCCCTCTATGTCTTAGATGCCCTCTTGATTGTTGATGATGAAAAATACTTTTTACAGAAGCTTCAAACCACTGGTTTTCTTAGAAATTGCATTGAGAGTCTGTCTGATCAGGAGGGTGGATATTCTCGAGAGTTGATGCAGCAAGCACGGACTCTAGAAGCGAAGCTTGCGGTATTATTGAGGATTAGTCACACGTATGGGACCATTGGAGCTCAAGTTTTATTTTCAATGGATATCCTCCAGCATTGTGCTTCATGCAGGGCAATGTCTATTTTTGGAATGACGACATTCACTCCAATGCTGAGATTGGTATTCAGCTTGTTGGTTCTGATCGATAGATATGACATTCTCGAGGTTAAAAATAACATTGCTTGGGAAGTGGCAAATTTCGTAAAATGCCATAACTCAATATTTGATGACCTTCTCTGGGAAGAAGGTGATGAGGAACCGAGAGAGTTAGCTCGTAGTATTGTAAGCAAGGTCTGGCGATTTGACAGTGCATTTCCCTGTCAAGAGGCTGTTGCAGCATCTCCTAGTTCTCCGCAGAAGTATAGTATTTTCTTTATATGTTGTATTGTCGTTATGATTTTTTATTTTCTACTTGATCTTTTGCATTGTATTTTTTATAGCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nup192

Protein Analysis

1369

Amino Acids

155.57

Weight (kDa)

5.0

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nup192 PF11894 26 - 141 2.4e-06 Nuclear pore complex scaffold, nucleoporins 186/192/205
Nup192 PF11894 393 - 984 1.7e-35 Nuclear pore complex scaffold, nucleoporins 186/192/205
Nup192 PF11894 1066 - 1249 1.2e-08 Nuclear pore complex scaffold, nucleoporins 186/192/205
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g38790
rosa_chinensis RchiOBHm_Chr2g0152361 RchiOBHm_Chr2g0152391

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1734, 2622
AarI CACCTGC 1 cut(s) 965
Acc36I ACCTGC 1 cut(s) 965
AccB1I GGYRCC 1 cut(s) 1466
AccI GTMKAC 2 cut(s) 392, 1769
AccII CGCG 1 cut(s) 2277
AciI CCGC 7 cut(s) 48, 54, 490, 2941, 3320, 3644, 4016
AcoI YGGCCR 2 cut(s) 583, 720
AcuI CTGAAG 2 cut(s) 2754, 3069
AfaI GTAC 5 cut(s) 501, 883, 1497, 3246, 3281
AfiI CCNNNNNNNGG 4 cut(s) 987, 988, 1476, 3901
AflIII ACRYGT 3 cut(s) 1498, 1953, 3666
AjiI CACGTC 1 cut(s) 1501
AjnI CCWGG 3 cut(s) 432, 813, 2987
AjuI GAANNNNNNNTTGG 2 cut(s) 2793, 2825
Alw21I GWGCWC 4 cut(s) 322, 2246, 2633, 3688
Alw26I GTCTC 3 cut(s) 66, 1507, 1674
Ama87I CYCGRG 2 cut(s) 3600, 3824
AoxI GGCC 6 cut(s) 440, 583, 720, 1039, 1206, 2985
ArsI GACNNNNNNTTYG 2 cut(s) 557, 589
Asp700I GAANNNNTTC 1 cut(s) 851
AspLEI GCGC 3 cut(s) 81, 784, 1450
AspS9I GGNCC 4 cut(s) 146, 440, 1040, 3675
AsuC2I CCSGG 2 cut(s) 83, 2019
AsuHPI GGTGA 5 cut(s) 803, 946, 962, 2756, 3923
AvaI CYCGRG 2 cut(s) 3600, 3824
AvaII GGWCC 2 cut(s) 146, 3675
BalI TGGCCA 2 cut(s) 585, 722
BamHI GGATCC 2 cut(s) 2825, 3325
BanI GGYRCC 1 cut(s) 1466
BanII GRGCYC 2 cut(s) 322, 3688
BauI CACGAG 1 cut(s) 162
BbsI GAAGAC 2 cut(s) 611, 2433
Bbv12I GWGCWC 4 cut(s) 322, 2246, 2633, 3688
BbvCI CCTCAGC 1 cut(s) 2669
BccI CCATC 4 cut(s) 157, 317, 863, 2276
BceAI ACGGC 2 cut(s) 365, 3263
BciT130I CCWGG 3 cut(s) 434, 815, 2989
BciVI GTATCC 1 cut(s) 2938
BclI TGATCA 3 cut(s) 951, 3147, 3580
BcnI CCSGG 2 cut(s) 83, 2019
BcoDI GTCTC 3 cut(s) 66, 1507, 1674
BfmI CTRYAG 2 cut(s) 669, 885
BfoI RGCGCY 1 cut(s) 82
BfuAI ACCTGC 1 cut(s) 965
BfuI GTATCC 1 cut(s) 2938
BglII AGATCT 1 cut(s) 3006
BmcAI AGTACT 1 cut(s) 3281
Bme1390I CCNGG 5 cut(s) 83, 434, 815, 2019, 2989
Bme18I GGWCC 2 cut(s) 146, 3675
BmeT110I CYCGRG 2 cut(s) 3600, 3824
BmgBI CACGTC 1 cut(s) 1501
BmgT120I GGNCC 4 cut(s) 146, 440, 1040, 3675
BmiI GGNNCC 6 cut(s) 147, 1468, 2827, 3327, 3676, 3921
BmrFI CCNGG 5 cut(s) 83, 434, 815, 2019, 2989
BmrI ACTGGG 1 cut(s) 1502
BmuI ACTGGG 1 cut(s) 1502
BpiI GAAGAC 2 cut(s) 611, 2433
BpmI CTGGAG 2 cut(s) 1796, 3698
Bpu10I CCTNAGC 1 cut(s) 2669
BpuEI CTTGAG 6 cut(s) 309, 1559, 2504, 2879, 2939, 3672
BpuMI CCSGG 2 cut(s) 83, 2019
Bsa29I ATCGAT 1 cut(s) 3807
BsaAI YACGTR 2 cut(s) 1414, 3669
BsaBI GATNNNNATC 1 cut(s) 807
BsaJI CCNNGG 1 cut(s) 507
BsaWI WCCGGW 3 cut(s) 588, 725, 1746
BsaXI ACNNNNNCTCC 6 cut(s) 468, 498, 3675, 3705, 3751, 3781
Bsc4I CCNNNNNNNGG 4 cut(s) 987, 988, 1476, 3901
Bse3DI GCAATG 4 cut(s) 529, 1617, 3744, 3840
Bse8I GATNNNNATC 1 cut(s) 807
BseBI CCWGG 3 cut(s) 434, 815, 2989
BseCI ATCGAT 1 cut(s) 3807
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 4 cut(s) 181, 734, 2287, 2641
BseJI GATNNNNATC 1 cut(s) 807
BseLI CCNNNNNNNGG 4 cut(s) 987, 988, 1476, 3901
BseMI GCAATG 4 cut(s) 529, 1617, 3744, 3840
BseMII CTCAG 8 cut(s) 8, 1187, 1842, 1898, 2031, 2376, 2660, 3767
BseRI GAGGAG 5 cut(s) 312, 330, 382, 1556, 1868
BsgI GTGCAG 3 cut(s) 186, 273, 3145
Bsh1236I CGCG 1 cut(s) 2277
BshFI GGCC 6 cut(s) 442, 585, 722, 1041, 1208, 2987
BshNI GGYRCC 1 cut(s) 1466
BshVI ATCGAT 1 cut(s) 3807
BsiHKAI GWGCWC 4 cut(s) 322, 2246, 2633, 3688
BsiHKCI CYCGRG 2 cut(s) 3600, 3824
BsiSI CCGG 7 cut(s) 82, 487, 589, 726, 1747, 2018, 3323
BslFI GGGAC 5 cut(s) 112, 1080, 2362, 3460, 3688
BslI CCNNNNNNNGG 4 cut(s) 987, 988, 1476, 3901
BsmAI GTCTC 3 cut(s) 66, 1507, 1674
BsmBI CGTCTC 2 cut(s) 66, 1507
BsmFI GGGAC 5 cut(s) 112, 1080, 2362, 3460, 3688
BsmI GAATGC 1 cut(s) 2853
BsnI GGCC 6 cut(s) 442, 585, 722, 1041, 1208, 2987
BsoBI CYCGRG 2 cut(s) 3600, 3824
Bsp1286I GDGCHC 4 cut(s) 322, 2246, 2633, 3688
Bsp1407I TGTACA 1 cut(s) 1495
BspACI CCGC 7 cut(s) 48, 54, 490, 2941, 3320, 3644, 4016
BspANI GGCC 6 cut(s) 442, 585, 722, 1041, 1208, 2987
BspCNI CTCAG 8 cut(s) 9, 1188, 1843, 1897, 2032, 2375, 2661, 3768
BspDI ATCGAT 1 cut(s) 3807
BspFNI CGCG 1 cut(s) 2277
BspHI TCATGA 2 cut(s) 706, 2596
BspLI GGNNCC 6 cut(s) 147, 1468, 2827, 3327, 3676, 3921
BspMAI CTGCAG 1 cut(s) 889
BspMI ACCTGC 1 cut(s) 965
BspQI GCTCTTC 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 1466
BsrDI GCAATG 4 cut(s) 529, 1617, 3744, 3840
BsrGI TGTACA 1 cut(s) 1495
BssECI CCNNGG 1 cut(s) 507
BssNAI GTATAC 2 cut(s) 393, 1770
BssSI CACGAG 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 507
Bst1107I GTATAC 2 cut(s) 393, 1770
Bst2BI CACGAG 1 cut(s) 162
Bst2UI CCWGG 3 cut(s) 434, 815, 2989
Bst6I CTCTTC 6 cut(s) 163, 414, 1320, 1547, 1668, 2733
BstAPI GCANNNNNTGC 1 cut(s) 3374
BstAUI TGTACA 1 cut(s) 1495
BstBAI YACGTR 2 cut(s) 1414, 3669
BstF5I GGATG 4 cut(s) 181, 734, 2287, 2641
BstFNI CGCG 1 cut(s) 2277
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 3 cut(s) 81, 784, 1450
BstMAI GTCTC 3 cut(s) 66, 1507, 1674
BstMWI GCNNNNNNNGC 9 cut(s) 756, 779, 1487, 1591, 2283, 2572, 3374, 3641, 3998
BstNI CCWGG 3 cut(s) 434, 815, 2989
BstNSI RCATGY 4 cut(s) 344, 1957, 2847, 2879
BstSCI CCNGG 5 cut(s) 81, 432, 813, 2017, 2987
BstSFI CTRYAG 2 cut(s) 669, 885
BstSNI TACGTA 1 cut(s) 1414
BstUI CGCG 1 cut(s) 2277
BstV2I GAAGAC 2 cut(s) 611, 2433
BstX2I RGATCY 6 cut(s) 1154, 1774, 2306, 2825, 3006, 3325
BstYI RGATCY 6 cut(s) 1154, 1774, 2306, 2825, 3006, 3325
BstZ17I GTATAC 2 cut(s) 393, 1770
Bsu15I ATCGAT 1 cut(s) 3807
BsuI GTATCC 1 cut(s) 2938
BsuRI GGCC 6 cut(s) 442, 585, 722, 1041, 1208, 2987
BsuTUI ATCGAT 1 cut(s) 3807
BtgZI GCGATG 1 cut(s) 2829
BtrI CACGTC 1 cut(s) 1501
BtsCI GGATG 4 cut(s) 181, 734, 2287, 2641
BtsIMutI CAGTG 8 cut(s) 548, 677, 1873, 2150, 2829, 3134, 3543, 3976
BveI ACCTGC 1 cut(s) 965
CciI TCATGA 2 cut(s) 706, 2596
CfoI GCGC 3 cut(s) 81, 784, 1450
Cfr13I GGNCC 4 cut(s) 146, 440, 1040, 3675
ClaI ATCGAT 1 cut(s) 3807
CseI GACGC 2 cut(s) 1823, 3368
CsiI ACCWGGT 1 cut(s) 432
Csp6I GTAC 5 cut(s) 500, 882, 1496, 3245, 3280
CviQI GTAC 5 cut(s) 500, 882, 1496, 3245, 3280
DraI TTTAAA 1 cut(s) 1161
EaeI YGGCCR 2 cut(s) 583, 720
Eam1104I CTCTTC 6 cut(s) 163, 414, 1320, 1547, 1668, 2733
EarI CTCTTC 6 cut(s) 163, 414, 1320, 1547, 1668, 2733
EciI GGCGGA 1 cut(s) 3309
Ecl136II GAGCTC 2 cut(s) 320, 3686
Eco105I TACGTA 1 cut(s) 1414
Eco130I CCWWGG 1 cut(s) 507
Eco147I AGGCCT 1 cut(s) 2987
Eco24I GRGCYC 2 cut(s) 322, 3688
Eco32I GATATC 3 cut(s) 1638, 3027, 3709
Eco47I GGWCC 2 cut(s) 146, 3675
Eco53kI GAGCTC 2 cut(s) 320, 3686
Eco57I CTGAAG 2 cut(s) 2754, 3069
Eco88I CYCGRG 2 cut(s) 3600, 3824
EcoICRI GAGCTC 2 cut(s) 320, 3686
EcoRI GAATTC 1 cut(s) 873
EcoRII CCWGG 3 cut(s) 432, 813, 2987
EcoRV GATATC 3 cut(s) 1638, 3027, 3709
EcoT14I CCWWGG 1 cut(s) 507
EcoT22I ATGCAT 1 cut(s) 667
EcoT38I GRGCYC 2 cut(s) 322, 3688
ErhI CCWWGG 1 cut(s) 507
Esp3I CGTCTC 2 cut(s) 66, 1507
FalI AAGNNNNNCTT 8 cut(s) 757, 789, 1454, 1486, 2532, 2564, 3624, 3656
FaqI GGGAC 5 cut(s) 112, 1080, 2362, 3460, 3688
FauI CCCGC 2 cut(s) 483, 2934
FbaI TGATCA 3 cut(s) 951, 3147, 3580
FblI GTMKAC 2 cut(s) 392, 1769
FokI GGATG 4 cut(s) 188, 741, 2294, 2648
FriOI GRGCYC 2 cut(s) 322, 3688
GlaI GCGC 3 cut(s) 80, 783, 1449
GsuI CTGGAG 2 cut(s) 1796, 3698
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 6 cut(s) 442, 585, 722, 1041, 1208, 2987
HapII CCGG 7 cut(s) 82, 487, 589, 726, 1747, 2018, 3323
HgaI GACGC 2 cut(s) 1823, 3368
HhaI GCGC 3 cut(s) 81, 784, 1450
Hin6I GCGC 3 cut(s) 79, 782, 1448
HinP1I GCGC 3 cut(s) 79, 782, 1448
HindIII AAGCTT 4 cut(s) 2417, 2564, 3533, 3638
HpaII CCGG 7 cut(s) 82, 487, 589, 726, 1747, 2018, 3323
HphI GGTGA 5 cut(s) 803, 946, 962, 2756, 3923
Hpy166II GTNNAC 7 cut(s) 393, 1128, 1498, 1770, 2140, 2396, 3260
Hpy8I GTNNAC 7 cut(s) 393, 1128, 1498, 1770, 2140, 2396, 3260
Hpy99I CGWCG 3 cut(s) 40, 76, 1636
HpyCH4IV ACGT 5 cut(s) 38, 1413, 1500, 2958, 3668
HpyF10VI GCNNNNNNNGC 9 cut(s) 756, 779, 1487, 1591, 2283, 2572, 3374, 3641, 3998
HpySE526I ACGT 5 cut(s) 38, 1413, 1500, 2958, 3668
HspAI GCGC 3 cut(s) 79, 782, 1448
Ksp22I TGATCA 3 cut(s) 951, 3147, 3580
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 9 cut(s) 76, 317, 325, 829, 1437, 2452, 2475, 2619, 3683
MabI ACCWGGT 1 cut(s) 432
MaeII ACGT 5 cut(s) 38, 1413, 1500, 2958, 3668
MfeI CAATTG 2 cut(s) 2054, 2712
MflI RGATCY 6 cut(s) 1154, 1774, 2306, 2825, 3006, 3325
MhlI GDGCHC 4 cut(s) 322, 2246, 2633, 3688
MlsI TGGCCA 2 cut(s) 585, 722
MluNI TGGCCA 2 cut(s) 585, 722
MlyI GAGTC 7 cut(s) 116, 149, 256, 2497, 3454, 3580, 3619
MmeI TCCRAC 6 cut(s) 54, 1126, 2110, 2136, 2181, 2191
Mox20I TGGCCA 2 cut(s) 585, 722
Mph1103I ATGCAT 1 cut(s) 667
MroXI GAANNNNTTC 1 cut(s) 851
MscI TGGCCA 2 cut(s) 585, 722
MslI CAYNNNNRTG 6 cut(s) 221, 255, 906, 2880, 3669, 3770
Msp20I TGGCCA 2 cut(s) 585, 722
MspA1I CMGCKG 3 cut(s) 428, 1795, 2239
MspI CCGG 7 cut(s) 82, 487, 589, 726, 1747, 2018, 3323
MspR9I CCNGG 5 cut(s) 83, 434, 815, 2019, 2989
MunI CAATTG 2 cut(s) 2054, 2712
Mva1269I GAATGC 1 cut(s) 2853
MvaI CCWGG 3 cut(s) 434, 815, 2989
MvnI CGCG 1 cut(s) 2277
MwoI GCNNNNNNNGC 9 cut(s) 756, 779, 1487, 1591, 2283, 2572, 3374, 3641, 3998
NciI CCSGG 2 cut(s) 83, 2019
NlaIV GGNNCC 6 cut(s) 147, 1468, 2827, 3327, 3676, 3921
NmuCI GTSAC 6 cut(s) 259, 673, 793, 1868, 2589, 3662
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 4 cut(s) 344, 1957, 2847, 2879
PaeI GCATGC 2 cut(s) 344, 2879
PaeR7I CTCGAG 2 cut(s) 3600, 3824
PagI TCATGA 2 cut(s) 706, 2596
PaqCI CACCTGC 1 cut(s) 965
PceI AGGCCT 1 cut(s) 2987
PciI ACATGT 1 cut(s) 1953
PciSI GCTCTTC 1 cut(s) 414
PctI GAATGC 1 cut(s) 2853
PdmI GAANNNNTTC 1 cut(s) 851
PflFI GACNNNGTC 1 cut(s) 1874
PleI GAGTC 7 cut(s) 115, 149, 256, 2496, 3453, 3579, 3619
PpsI GAGTC 7 cut(s) 115, 149, 256, 2496, 3453, 3579, 3619
Ppu21I YACGTR 2 cut(s) 1414, 3669
PscI ACATGT 1 cut(s) 1953
PsiI TTATAA 2 cut(s) 1734, 2622
Psp124BI GAGCTC 2 cut(s) 322, 3688
Psp6I CCWGG 3 cut(s) 432, 813, 2987
PspGI CCWGG 3 cut(s) 432, 813, 2987
PspN4I GGNNCC 6 cut(s) 147, 1468, 2827, 3327, 3676, 3921
PspPI GGNCC 4 cut(s) 146, 440, 1040, 3675
PsrI GAACNNNNNNTAC 2 cut(s) 2388, 2420
PstI CTGCAG 1 cut(s) 889
PsuI RGATCY 6 cut(s) 1154, 1774, 2306, 2825, 3006, 3325
PsyI GACNNNGTC 1 cut(s) 1874
PvuII CAGCTG 3 cut(s) 428, 1795, 2239
RsaI GTAC 5 cut(s) 501, 883, 1497, 3246, 3281
RsaNI GTAC 5 cut(s) 500, 882, 1496, 3245, 3280
RseI CAYNNNNRTG 6 cut(s) 221, 255, 906, 2880, 3669, 3770
SacI GAGCTC 2 cut(s) 322, 3688
SapI GCTCTTC 1 cut(s) 414
Sau96I GGNCC 4 cut(s) 146, 440, 1040, 3675
ScaI AGTACT 1 cut(s) 3281
SchI GAGTC 7 cut(s) 116, 149, 256, 2497, 3454, 3580, 3619
ScrFI CCNGG 5 cut(s) 83, 434, 815, 2019, 2989
SduI GDGCHC 4 cut(s) 322, 2246, 2633, 3688
SexAI ACCWGGT 1 cut(s) 432
SfcI CTRYAG 2 cut(s) 669, 885
Sfr274I CTCGAG 2 cut(s) 3600, 3824
SinI GGWCC 2 cut(s) 146, 3675
SlaI CTCGAG 2 cut(s) 3600, 3824
SmiMI CAYNNNNRTG 6 cut(s) 221, 255, 906, 2880, 3669, 3770
SmlI CTYRAG 8 cut(s) 324, 1538, 2483, 2858, 2918, 3600, 3687, 3824
SmoI CTYRAG 8 cut(s) 324, 1538, 2483, 2858, 2918, 3600, 3687, 3824
SnaBI TACGTA 1 cut(s) 1414
SphI GCATGC 2 cut(s) 344, 2879
SseBI AGGCCT 1 cut(s) 2987
SsiI CCGC 7 cut(s) 48, 54, 490, 2941, 3320, 3644, 4016
SspI AATATT 2 cut(s) 1357, 3885
SstI GAGCTC 2 cut(s) 322, 3688
StuI AGGCCT 1 cut(s) 2987
StyD4I CCNGG 5 cut(s) 81, 432, 813, 2017, 2987
StyI CCWWGG 1 cut(s) 507
TaiI ACGT 5 cut(s) 41, 1416, 1503, 2961, 3671
TaqI TCGA 8 cut(s) 415, 545, 1631, 2886, 3297, 3601, 3807, 3825
TatI WGTACW 3 cut(s) 499, 1495, 3279
TscAI CASTG 8 cut(s) 555, 684, 1873, 2150, 2836, 3141, 3550, 3976
TseFI GTSAC 6 cut(s) 259, 673, 793, 1868, 2589, 3662
Tsp45I GTSAC 6 cut(s) 259, 673, 793, 1868, 2589, 3662
TspGWI ACGGA 3 cut(s) 60, 263, 3637
TspRI CASTG 8 cut(s) 555, 684, 1873, 2150, 2836, 3141, 3550, 3976
Tth111I GACNNNGTC 1 cut(s) 1874
VpaK11BI GGWCC 2 cut(s) 146, 3675
XbaI TCTAGA 6 cut(s) 295, 1918, 2173, 2422, 2836, 3628
XceI RCATGY 4 cut(s) 344, 1957, 2847, 2879
XhoI CTCGAG 2 cut(s) 3600, 3824
XmiI GTMKAC 2 cut(s) 392, 1769
XmnI GAANNNNTTC 1 cut(s) 851
ZrmI AGTACT 1 cut(s) 3281
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.