RchiOBHm_Chr2g0152391

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0024188
Physical Location & Seq
Reverse (-)
69794555 .. 69804060
9506 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52154

Sequence Viewer

Length: 3840 bp
ATGAGCAGCAACCGACTGAGAAAAGTGATTTCGGCGACGTTGCTCTGCGGAGGCGGTTCGTCTCCTACTCCGTCGGAGCGCCGGGAGTTGAACGAAGCACTCAACGAGTCTATCACTTCATTTCAGTCCCTCTTGGCTTTTACGGGTCCATCGGACTCTTCTCGTGCAGAGCTGGATGAAATTGAAATGCCCGATTCACTTAATAACGATGAGGACATTGAAATGGTTTTGGATATGAGTGATGAACTGCATCTCAATGTGACTCATTGTGTCCGTTTGATTCAGTCTGCACATCTAGAGTGGGCTTCCATCGGAGGAGCTCCTCAAGACATTTTGAAGCATGCAATACGGCTGTGGTTTAAGGAGAGGAGGGAAATTCTGGAAGATTTGTATACTTTGTTGAGGGAACTTAATCGAGAAGAGCCAGCTGACCTGGTTGGGCCTCATTCTGAACCATGTGTTCTTGATTCTAGTGGAGTTCTCGTCCGGCGGGAAGATGTACTGTCCTTGGAAAAGCTCATACTTGGGCATTGCCTTTGCCTTTCGACACTGGTTGTTGGCTCAAGTTGCTGTTCTCCAAATGCATCTATAGTGACACTGGAAGATTCATTCAAAAATGAATTTCATGAAATTGTAATGGCCACCGGATGTGATCCAAATGTTGAGGGCTTTATTGGCTGCATAAGATTAGCTTGGGCAGCGCACATGATAGTCACACAAGATTTGGATCACCTGGATTCTTGTTTGGAGCTAGTTTTTCAGAAGAATGTATTCCAGTTTATATCAGATGGAATTCTTGGTACTGCAGCATATCAGAACCATGATGATGAGGATATGAGCTATATATACAACATTTATTTTGGCAAGCTGATCACCTGCTTGGTATCTCACCCACTTTCCCTACAAAGGGTCAGACAATCAAAGGACATGGCTATAACATCACAAGGTCGTGAAACTGGCCCTTTACCATTTCTCTCTCTCTTGGGACTGGTGGGAAAAATCTATGAGAAGAATCAAGAGCTGTTGTCTGGCAATTATGTGTTGTGGACATTTGTGAATATGGTTGGAGAGGGATCTTTAAATTTTCAAACCCGTGTGGCTTTCTTGAATATGCTGAGTTCATTGGCCTCTAGTCAAGAAAGCACTTCAAAGGTTTTTGAATTACTTAGGTGGCGTGATGAGTTTGAAACATTCTTTGCTCACTTAACAAGTTATCATGCTCGCTTCTTACAACTAGCAGAGGAAGAGGGAAAAGAACTTGCTTCGTATTTGAATATTCTTCAAAAGGTTGTGGAACATGGAAACCTCCTTGAATTAAACTCGTTTGCTTACGTAGAACCTTTATTCAAGCTCCTTCTCTCTGGTGCGCCTCCTTATGTGAAGGGTGCCTTATTGGGGGCAATAAAAGCCTTTGTACACGTCTCCCCAGTCCTAAAAGATGAAATTTGGGAGAAACTTGAGGAGTATGGGAAGAGTGGATATATGCTACGGGTATATGATATGCAATTTGAGCTGAATGAAGTAGAAGCAATGATTCAGAACTATCCTTCGACGATATCATTCCTTGACCTGTTAAACACTCTTCTTCTGGAAGAAAGAGACTTGGATTGTCTAAAGCAAAGCTGTGTTGCAATTTTCTTTTGGTTCATTTATAATGATGTTTTCCGGTTATTCCCTCAAAGAGCGTATACAGATCCTTTTCAGAAATGGCAGCTGGTAGTTGCTTGCCTCCAGCATTTTCACACGATTTTGCGTCTGTATGACATCTCTGAGGAGGGCATCAACAGTGACCTTGTCAATTCTCAGCGTTCAACAGTAATACCCATAGTAGAATTTCTAGAAAAGAACATCATTGGATTCCTTCTTTTCTACATGTTGTTACAGGATTTCACAAGTGGAAATACTGTTTTCCAAAACATTATGTGTATTCTTTTGCCGGGTGTCAATGAGCTTATGTCTGAGAGGACAAATCAATTGTATGGGAAACTTTTGGAGAAGGCAGTCCAACTGTCTATGGAAATTATAGTCCTTGTATTAGAGAAGGATTTGCTTGCAGTTTACCAGTGGCGACTGTTGGAAGTTATGCTCTCTCTAGACTTCAATCAAATTTTAGCTCTGTTGGAGTATGTCGGATATTATTTTGAACCACAAATTCAGCTGTGCTCTATCAAGATCATGTCTATATTGAGTTCTCGCGTGGATGGCTTCGTGGAGTTACTGCTAAGATCCAATGCTGCAATATCTTTGATTGGAAAGTATGCAGCCTGCCTAGAATTACGCTCAGAAGTTTGTAAGTCCCTTGATGATGCAAGTGAACCAGCTATACTGATAATGAAGCTTCTAGAAGACAATATAAGCCAACCAGCTCCCAATATCACTCATTTTCTGCTCCATTTTGATCTTGAGAGTCCTACTGGACAGTTTGTGTTACAACCAAAATTTCCTCACAGTTGTTTGAAAGTTATTCTTGAAATTCTGGACAAGCTTTCAAAGCCTAAAGTAAATATGTCACTTCATGAATCTGGGTTTAAGCTCCTTTATAAGTTGTGCTCGGATGCTAAGACACACGATTCTATGATGAAGCTGCTGAGGGGTAAAGAGTATCTGTTCTTTGCAAAGCACCTAGATACAATTGGCGTTTGCCCTCTTCCTGAAGAACATTCCCTGTGCATCAGTTCCCTTCACCAGAGAACTTGGCTGTTGAAACTATTAGCTGTTGAACTTTATGTTGGCGATGTCAATGGATCCACTGATCTAGAAGCATGTGATAGCATTCTTGAGCATCTTTTTGGGCATGCAAATGTCGAAAATACCAAGAGTAAGGTCTTGGAGTTACTTGAGATAGTCCAATCTGGTTTGCGGGATACCAGCATGGACGTAAATGCAAACCTTGATATGTTCAAGGCCTGGTCAGACATTATTGAGATCTCTGCTTTGAGAAGGATATCATCACTTGGACAACGAACTGAAGTTCTATATCAGCAATATGGTTTACTTCTTAGCTTTTTCCAGTACTGTCAAAATGCACTCGATCCAGATATTGAGATTGATCCGCCGGATCCAGATAGGCTGATGAACCAAGAACGAGCAGACGCATTGGCAGAGTTTGCTCTTACTAATTTCTCTATATTAAGGAAAGAAGCTCAACCTATTCTGGATTTGGTAATAAGTGATGCGAGTCAAGGAAGTGAAAAGATGAAAACGATGTCCCTCTATGTCTTAGATGCCCTCTTGATTGTTGATGATGAAAAATACTTTTTACAGAAGCTTCAAACCACTGGTTTTCTTAGAAATTGCATTGAGAGTCTGTCTGATCAGGGTGGATATTCTCGAGAGTTGATGCAGCAAGCACGGACTCTAGAAGCGAAGCTTGCGGTATTATTGAGGATTAGTCACACGTATGGGACCATTGGAGCTCAAGTTTTATTTTCAATGGATATCCTCCAGCATTGTGCTTCATGCAGGGCAATGTCTATTTTTGGAATGACGACATTCACTCCAATGCTGAGATTGGTATTCAGCTTGTTGGTTCTGATCGATAGATATGACATTCTCGAGGTTAAAAATAACATTGCTTGGGAAGTGGCAAATTTCGTAAAATGCCATAACTCAATATTTGATGACCTTCTCTGGGAAGAAGGTGATGAGGAACCGAGAGAGTTAGCTCGTAGTATTGTAAGCAAGGTCTGGCGATTTGACAGTGCATTTCCCTGTCAAGAGGCTGTTGCAGCATCTCCTAGTTCTCCGCAGAAGTATAGTATTTTCTTTATATGTTGTATTGTCGTTATGATTTTTTATTTTCTACTTGATCTTTTGCATTGTATTTTTTATAGCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nup192

Protein Analysis

1279

Amino Acids

145.21

Weight (kDa)

4.89

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nup192 PF11894 26 - 141 2.3e-06 Nuclear pore complex scaffold, nucleoporins 186/192/205
Nup192 PF11894 366 - 957 1.5e-35 Nuclear pore complex scaffold, nucleoporins 186/192/205
Nup192 PF11894 993 - 1159 1.1e-07 Nuclear pore complex scaffold, nucleoporins 186/192/205
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g38790
rosa_chinensis RchiOBHm_Chr2g0152361 RchiOBHm_Chr2g0152391

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1653, 2541
AarI CACCTGC 1 cut(s) 884
Acc36I ACCTGC 1 cut(s) 884
AccB1I GGYRCC 1 cut(s) 1385
AccI GTMKAC 2 cut(s) 392, 1688
AccII CGCG 1 cut(s) 2196
AciI CCGC 7 cut(s) 48, 54, 490, 2860, 3053, 3374, 3746
AcoI YGGCCR 1 cut(s) 639
AcuI CTGAAG 2 cut(s) 2673, 2988
AfaI GTAC 4 cut(s) 501, 802, 1416, 3014
AfiI CCNNNNNNNGG 4 cut(s) 906, 907, 1395, 3631
AflIII ACRYGT 3 cut(s) 1417, 1872, 3396
AjiI CACGTC 1 cut(s) 1420
AjnI CCWGG 3 cut(s) 432, 732, 2906
AjuI GAANNNNNNNTTGG 2 cut(s) 2712, 2744
Alw21I GWGCWC 4 cut(s) 322, 2165, 2552, 3418
Alw26I GTCTC 3 cut(s) 66, 1426, 1593
Ama87I CYCGRG 2 cut(s) 3330, 3554
AoxI GGCC 5 cut(s) 440, 639, 958, 1125, 2904
Asp700I GAANNNNTTC 1 cut(s) 770
AspLEI GCGC 3 cut(s) 81, 703, 1369
AspS9I GGNCC 4 cut(s) 146, 440, 959, 3405
AsuC2I CCSGG 2 cut(s) 83, 1938
AsuHPI GGTGA 5 cut(s) 722, 865, 881, 2675, 3653
AvaI CYCGRG 2 cut(s) 3330, 3554
AvaII GGWCC 2 cut(s) 146, 3405
BalI TGGCCA 1 cut(s) 641
BamHI GGATCC 2 cut(s) 2744, 3058
BanI GGYRCC 1 cut(s) 1385
BanII GRGCYC 2 cut(s) 322, 3418
BauI CACGAG 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 2352
Bbv12I GWGCWC 4 cut(s) 322, 2165, 2552, 3418
BbvCI CCTCAGC 1 cut(s) 2588
BccI CCATC 4 cut(s) 157, 317, 782, 2195
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 3 cut(s) 434, 734, 2908
BciVI GTATCC 1 cut(s) 2857
BclI TGATCA 2 cut(s) 870, 3313
BcnI CCSGG 2 cut(s) 83, 1938
BcoDI GTCTC 3 cut(s) 66, 1426, 1593
BfmI CTRYAG 2 cut(s) 588, 804
BfoI RGCGCY 1 cut(s) 82
BfuAI ACCTGC 1 cut(s) 884
BfuI GTATCC 1 cut(s) 2857
BglII AGATCT 1 cut(s) 2925
BmcAI AGTACT 1 cut(s) 3014
Bme1390I CCNGG 5 cut(s) 83, 434, 734, 1938, 2908
Bme18I GGWCC 2 cut(s) 146, 3405
BmeT110I CYCGRG 2 cut(s) 3330, 3554
BmgBI CACGTC 1 cut(s) 1420
BmgT120I GGNCC 4 cut(s) 146, 440, 959, 3405
BmiI GGNNCC 6 cut(s) 147, 1387, 2746, 3060, 3406, 3651
BmrFI CCNGG 5 cut(s) 83, 434, 734, 1938, 2908
BmrI ACTGGG 1 cut(s) 1421
BmuI ACTGGG 1 cut(s) 1421
BpiI GAAGAC 1 cut(s) 2352
BpmI CTGGAG 2 cut(s) 1715, 3428
Bpu10I CCTNAGC 1 cut(s) 2588
BpuEI CTTGAG 7 cut(s) 309, 547, 1478, 2423, 2798, 2858, 3402
BpuMI CCSGG 2 cut(s) 83, 1938
Bsa29I ATCGAT 1 cut(s) 3537
BsaAI YACGTR 2 cut(s) 1333, 3399
BsaBI GATNNNNATC 1 cut(s) 726
BsaJI CCNNGG 1 cut(s) 507
BsaWI WCCGGW 2 cut(s) 644, 1665
BsaXI ACNNNNNCTCC 6 cut(s) 468, 498, 3405, 3435, 3481, 3511
Bsc4I CCNNNNNNNGG 4 cut(s) 906, 907, 1395, 3631
Bse3DI GCAATG 4 cut(s) 529, 1536, 3474, 3570
Bse8I GATNNNNATC 1 cut(s) 726
BseBI CCWGG 3 cut(s) 434, 734, 2908
BseCI ATCGAT 1 cut(s) 3537
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 4 cut(s) 181, 653, 2206, 2560
BseJI GATNNNNATC 1 cut(s) 726
BseLI CCNNNNNNNGG 4 cut(s) 906, 907, 1395, 3631
BseMI GCAATG 4 cut(s) 529, 1536, 3474, 3570
BseMII CTCAG 8 cut(s) 8, 1106, 1761, 1817, 1950, 2295, 2579, 3497
BseRI GAGGAG 5 cut(s) 312, 330, 382, 1475, 1787
BsgI GTGCAG 2 cut(s) 186, 273
Bsh1236I CGCG 1 cut(s) 2196
BshFI GGCC 5 cut(s) 442, 641, 960, 1127, 2906
BshNI GGYRCC 1 cut(s) 1385
BshVI ATCGAT 1 cut(s) 3537
BsiHKAI GWGCWC 4 cut(s) 322, 2165, 2552, 3418
BsiHKCI CYCGRG 2 cut(s) 3330, 3554
BsiSI CCGG 6 cut(s) 82, 487, 645, 1666, 1937, 3056
BslFI GGGAC 5 cut(s) 112, 999, 2281, 3193, 3418
BslI CCNNNNNNNGG 4 cut(s) 906, 907, 1395, 3631
BsmAI GTCTC 3 cut(s) 66, 1426, 1593
BsmBI CGTCTC 2 cut(s) 66, 1426
BsmFI GGGAC 5 cut(s) 112, 999, 2281, 3193, 3418
BsmI GAATGC 1 cut(s) 2772
BsnI GGCC 5 cut(s) 442, 641, 960, 1127, 2906
BsoBI CYCGRG 2 cut(s) 3330, 3554
Bsp1286I GDGCHC 4 cut(s) 322, 2165, 2552, 3418
Bsp1407I TGTACA 1 cut(s) 1414
BspACI CCGC 7 cut(s) 48, 54, 490, 2860, 3053, 3374, 3746
BspANI GGCC 5 cut(s) 442, 641, 960, 1127, 2906
BspCNI CTCAG 8 cut(s) 9, 1107, 1762, 1816, 1951, 2294, 2580, 3498
BspDI ATCGAT 1 cut(s) 3537
BspFNI CGCG 1 cut(s) 2196
BspHI TCATGA 2 cut(s) 625, 2515
BspLI GGNNCC 6 cut(s) 147, 1387, 2746, 3060, 3406, 3651
BspMAI CTGCAG 1 cut(s) 808
BspMI ACCTGC 1 cut(s) 884
BspQI GCTCTTC 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 1385
BsrDI GCAATG 4 cut(s) 529, 1536, 3474, 3570
BsrGI TGTACA 1 cut(s) 1414
BssECI CCNNGG 1 cut(s) 507
BssNAI GTATAC 2 cut(s) 393, 1689
BssSI CACGAG 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 507
Bst1107I GTATAC 2 cut(s) 393, 1689
Bst2BI CACGAG 1 cut(s) 162
Bst2UI CCWGG 3 cut(s) 434, 734, 2908
Bst6I CTCTTC 6 cut(s) 163, 414, 1239, 1466, 1587, 2652
BstAPI GCANNNNNTGC 1 cut(s) 3107
BstAUI TGTACA 1 cut(s) 1414
BstBAI YACGTR 2 cut(s) 1333, 3399
BstF5I GGATG 4 cut(s) 181, 653, 2206, 2560
BstFNI CGCG 1 cut(s) 2196
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 3 cut(s) 81, 703, 1369
BstMAI GTCTC 3 cut(s) 66, 1426, 1593
BstNI CCWGG 3 cut(s) 434, 734, 2908
BstNSI RCATGY 4 cut(s) 344, 1876, 2766, 2798
BstSCI CCNGG 5 cut(s) 81, 432, 732, 1936, 2906
BstSFI CTRYAG 2 cut(s) 588, 804
BstSNI TACGTA 1 cut(s) 1333
BstUI CGCG 1 cut(s) 2196
BstV2I GAAGAC 1 cut(s) 2352
BstX2I RGATCY 6 cut(s) 1073, 1693, 2225, 2744, 2925, 3058
BstYI RGATCY 6 cut(s) 1073, 1693, 2225, 2744, 2925, 3058
BstZ17I GTATAC 2 cut(s) 393, 1689
Bsu15I ATCGAT 1 cut(s) 3537
BsuI GTATCC 1 cut(s) 2857
BsuRI GGCC 5 cut(s) 442, 641, 960, 1127, 2906
BsuTUI ATCGAT 1 cut(s) 3537
BtgZI GCGATG 1 cut(s) 2748
BtrI CACGTC 1 cut(s) 1420
BtsCI GGATG 4 cut(s) 181, 653, 2206, 2560
BtsIMutI CAGTG 7 cut(s) 548, 596, 1792, 2069, 2748, 3276, 3706
BveI ACCTGC 1 cut(s) 884
CciI TCATGA 2 cut(s) 625, 2515
CfoI GCGC 3 cut(s) 81, 703, 1369
Cfr13I GGNCC 4 cut(s) 146, 440, 959, 3405
ClaI ATCGAT 1 cut(s) 3537
CseI GACGC 2 cut(s) 1742, 3101
CsiI ACCWGGT 1 cut(s) 432
Csp6I GTAC 4 cut(s) 500, 801, 1415, 3013
CviQI GTAC 4 cut(s) 500, 801, 1415, 3013
DraI TTTAAA 1 cut(s) 1080
EaeI YGGCCR 1 cut(s) 639
Eam1104I CTCTTC 6 cut(s) 163, 414, 1239, 1466, 1587, 2652
EarI CTCTTC 6 cut(s) 163, 414, 1239, 1466, 1587, 2652
EciI GGCGGA 1 cut(s) 3042
Ecl136II GAGCTC 2 cut(s) 320, 3416
Eco105I TACGTA 1 cut(s) 1333
Eco130I CCWWGG 1 cut(s) 507
Eco147I AGGCCT 1 cut(s) 2906
Eco24I GRGCYC 2 cut(s) 322, 3418
Eco32I GATATC 3 cut(s) 1557, 2946, 3439
Eco47I GGWCC 2 cut(s) 146, 3405
Eco53kI GAGCTC 2 cut(s) 320, 3416
Eco57I CTGAAG 2 cut(s) 2673, 2988
Eco88I CYCGRG 2 cut(s) 3330, 3554
EcoICRI GAGCTC 2 cut(s) 320, 3416
EcoRI GAATTC 1 cut(s) 792
EcoRII CCWGG 3 cut(s) 432, 732, 2906
EcoRV GATATC 3 cut(s) 1557, 2946, 3439
EcoT14I CCWWGG 1 cut(s) 507
EcoT22I ATGCAT 1 cut(s) 586
EcoT38I GRGCYC 2 cut(s) 322, 3418
ErhI CCWWGG 1 cut(s) 507
Esp3I CGTCTC 2 cut(s) 66, 1426
FalI AAGNNNNNCTT 8 cut(s) 676, 708, 1373, 1405, 2451, 2483, 3354, 3386
FaqI GGGAC 5 cut(s) 112, 999, 2281, 3193, 3418
FauI CCCGC 2 cut(s) 483, 2853
FbaI TGATCA 2 cut(s) 870, 3313
FblI GTMKAC 2 cut(s) 392, 1688
FokI GGATG 4 cut(s) 188, 660, 2213, 2567
FriOI GRGCYC 2 cut(s) 322, 3418
GlaI GCGC 3 cut(s) 80, 702, 1368
GsuI CTGGAG 2 cut(s) 1715, 3428
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 5 cut(s) 442, 641, 960, 1127, 2906
HapII CCGG 6 cut(s) 82, 487, 645, 1666, 1937, 3056
HgaI GACGC 2 cut(s) 1742, 3101
HhaI GCGC 3 cut(s) 81, 703, 1369
Hin6I GCGC 3 cut(s) 79, 701, 1367
HinP1I GCGC 3 cut(s) 79, 701, 1367
HindIII AAGCTT 4 cut(s) 2336, 2483, 3266, 3368
HpaII CCGG 6 cut(s) 82, 487, 645, 1666, 1937, 3056
HphI GGTGA 5 cut(s) 722, 865, 881, 2675, 3653
Hpy166II GTNNAC 7 cut(s) 393, 1047, 1417, 1689, 2059, 2315, 2993
Hpy8I GTNNAC 7 cut(s) 393, 1047, 1417, 1689, 2059, 2315, 2993
Hpy99I CGWCG 3 cut(s) 40, 76, 1555
HpyCH4IV ACGT 5 cut(s) 38, 1332, 1419, 2877, 3398
HpySE526I ACGT 5 cut(s) 38, 1332, 1419, 2877, 3398
HspAI GCGC 3 cut(s) 79, 701, 1367
Ksp22I TGATCA 2 cut(s) 870, 3313
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 9 cut(s) 76, 317, 325, 748, 1356, 2371, 2394, 2538, 3413
MabI ACCWGGT 1 cut(s) 432
MaeII ACGT 5 cut(s) 38, 1332, 1419, 2877, 3398
MfeI CAATTG 2 cut(s) 1973, 2631
MflI RGATCY 6 cut(s) 1073, 1693, 2225, 2744, 2925, 3058
MhlI GDGCHC 4 cut(s) 322, 2165, 2552, 3418
MlsI TGGCCA 1 cut(s) 641
MluNI TGGCCA 1 cut(s) 641
MlyI GAGTC 7 cut(s) 116, 149, 256, 2416, 3187, 3313, 3349
MmeI TCCRAC 6 cut(s) 54, 1045, 2029, 2055, 2100, 2110
Mox20I TGGCCA 1 cut(s) 641
Mph1103I ATGCAT 1 cut(s) 586
MroXI GAANNNNTTC 1 cut(s) 770
MscI TGGCCA 1 cut(s) 641
MslI CAYNNNNRTG 6 cut(s) 221, 255, 825, 2799, 3399, 3500
Msp20I TGGCCA 1 cut(s) 641
MspA1I CMGCKG 3 cut(s) 428, 1714, 2158
MspI CCGG 6 cut(s) 82, 487, 645, 1666, 1937, 3056
MspR9I CCNGG 5 cut(s) 83, 434, 734, 1938, 2908
MunI CAATTG 2 cut(s) 1973, 2631
Mva1269I GAATGC 1 cut(s) 2772
MvaI CCWGG 3 cut(s) 434, 734, 2908
MvnI CGCG 1 cut(s) 2196
NciI CCSGG 2 cut(s) 83, 1938
NlaIV GGNNCC 6 cut(s) 147, 1387, 2746, 3060, 3406, 3651
NmuCI GTSAC 6 cut(s) 259, 592, 712, 1787, 2508, 3392
NsiI ATGCAT 1 cut(s) 586
NspI RCATGY 4 cut(s) 344, 1876, 2766, 2798
PaeI GCATGC 2 cut(s) 344, 2798
PaeR7I CTCGAG 2 cut(s) 3330, 3554
PagI TCATGA 2 cut(s) 625, 2515
PaqCI CACCTGC 1 cut(s) 884
PceI AGGCCT 1 cut(s) 2906
PciI ACATGT 1 cut(s) 1872
PciSI GCTCTTC 1 cut(s) 414
PctI GAATGC 1 cut(s) 2772
PdmI GAANNNNTTC 1 cut(s) 770
PflFI GACNNNGTC 1 cut(s) 1793
PleI GAGTC 7 cut(s) 115, 149, 256, 2415, 3186, 3312, 3349
PpsI GAGTC 7 cut(s) 115, 149, 256, 2415, 3186, 3312, 3349
Ppu21I YACGTR 2 cut(s) 1333, 3399
PscI ACATGT 1 cut(s) 1872
PsiI TTATAA 2 cut(s) 1653, 2541
Psp124BI GAGCTC 2 cut(s) 322, 3418
Psp6I CCWGG 3 cut(s) 432, 732, 2906
PspGI CCWGG 3 cut(s) 432, 732, 2906
PspN4I GGNNCC 6 cut(s) 147, 1387, 2746, 3060, 3406, 3651
PspPI GGNCC 4 cut(s) 146, 440, 959, 3405
PsrI GAACNNNNNNTAC 2 cut(s) 2307, 2339
PstI CTGCAG 1 cut(s) 808
PsuI RGATCY 6 cut(s) 1073, 1693, 2225, 2744, 2925, 3058
PsyI GACNNNGTC 1 cut(s) 1793
PvuII CAGCTG 3 cut(s) 428, 1714, 2158
RsaI GTAC 4 cut(s) 501, 802, 1416, 3014
RsaNI GTAC 4 cut(s) 500, 801, 1415, 3013
RseI CAYNNNNRTG 6 cut(s) 221, 255, 825, 2799, 3399, 3500
SacI GAGCTC 2 cut(s) 322, 3418
SapI GCTCTTC 1 cut(s) 414
Sau96I GGNCC 4 cut(s) 146, 440, 959, 3405
ScaI AGTACT 1 cut(s) 3014
SchI GAGTC 7 cut(s) 116, 149, 256, 2416, 3187, 3313, 3349
ScrFI CCNGG 5 cut(s) 83, 434, 734, 1938, 2908
SduI GDGCHC 4 cut(s) 322, 2165, 2552, 3418
SexAI ACCWGGT 1 cut(s) 432
SfcI CTRYAG 2 cut(s) 588, 804
Sfr274I CTCGAG 2 cut(s) 3330, 3554
SinI GGWCC 2 cut(s) 146, 3405
SlaI CTCGAG 2 cut(s) 3330, 3554
SmiMI CAYNNNNRTG 6 cut(s) 221, 255, 825, 2799, 3399, 3500
SmlI CTYRAG 9 cut(s) 324, 562, 1457, 2402, 2777, 2837, 3330, 3417, 3554
SmoI CTYRAG 9 cut(s) 324, 562, 1457, 2402, 2777, 2837, 3330, 3417, 3554
SnaBI TACGTA 1 cut(s) 1333
SphI GCATGC 2 cut(s) 344, 2798
SseBI AGGCCT 1 cut(s) 2906
SsiI CCGC 7 cut(s) 48, 54, 490, 2860, 3053, 3374, 3746
SspI AATATT 2 cut(s) 1276, 3615
SstI GAGCTC 2 cut(s) 322, 3418
StuI AGGCCT 1 cut(s) 2906
StyD4I CCNGG 5 cut(s) 81, 432, 732, 1936, 2906
StyI CCWWGG 1 cut(s) 507
TaiI ACGT 5 cut(s) 41, 1335, 1422, 2880, 3401
TaqI TCGA 8 cut(s) 415, 545, 1550, 2805, 3030, 3331, 3537, 3555
TatI WGTACW 3 cut(s) 499, 1414, 3012
TscAI CASTG 7 cut(s) 555, 603, 1792, 2069, 2755, 3283, 3706
TseFI GTSAC 6 cut(s) 259, 592, 712, 1787, 2508, 3392
Tsp45I GTSAC 6 cut(s) 259, 592, 712, 1787, 2508, 3392
TspGWI ACGGA 3 cut(s) 60, 263, 3367
TspRI CASTG 7 cut(s) 555, 603, 1792, 2069, 2755, 3283, 3706
Tth111I GACNNNGTC 1 cut(s) 1793
VpaK11BI GGWCC 2 cut(s) 146, 3405
XbaI TCTAGA 6 cut(s) 295, 1837, 2092, 2341, 2755, 3358
XceI RCATGY 4 cut(s) 344, 1876, 2766, 2798
XhoI CTCGAG 2 cut(s) 3330, 3554
XmiI GTMKAC 2 cut(s) 392, 1688
XmnI GAANNNNTTC 1 cut(s) 770
ZrmI AGTACT 1 cut(s) 3014
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.