Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024806

Physical Location & Seq

Genomic Coordinates Forward (+)

82150672 .. 82150939

Gene Structure 268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53557

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGCCTAACAACATCATATCTTGGAATGCCTTGATTGTTGGATATGGTAACCGTGGTTGGGGTGATGAGGCTGTTGAGATGTTTGAGAAGATGCTTCAGGCAGGAATGATACCCAACCATGTTACATTTCTTGTTGTCTTTGTCTGCTTGCCGTTGTTCAGGTTTATCAGAACGTGGATGGGAGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

63

Amino Acids

7.29

Weight (kDa)

5.54

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	4 - 47	6.9e-11	PPR repeat family
PPR	PF01535	6 - 35	6.9e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024806)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0167811
rosa_multiflora	Rmu_sc0003354.1_g000003
rosa_samantha	Rh2AG601100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	74
BccI	CCATC	1 cut(s)	172
BceAI	ACGGC	1 cut(s)	136
BmsI	GCATC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	149
BstDSI	CCRYGG	1 cut(s)	52
BstEII	GGTNACC	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	183
BstPI	GGTNACC	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	149
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	1 cut(s)	71
CviKI_1	RGCY	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	47
EcoO65I	GGTNACC	1 cut(s)	47
FaeI	CATG	1 cut(s)	122
FaiI	YATR	3 cut(s)	17, 45, 120
FatI	CATG	1 cut(s)	118
Hin1II	CATG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	74
Hpy188I	TCNGA	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	122
LpnPI	CCDG	3 cut(s)	83, 87, 145
LweI	GCATC	1 cut(s)	81
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	47, 121
MboII	GAAGA	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	1 cut(s)	61
Mva1269I	GAATGC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	122
PctI	GAATGC	1 cut(s)	31
PspEI	GGTNACC	1 cut(s)	47
SetI	ASST	2 cut(s)	164, 176
SfaNI	GCATC	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.