Pentatricopeptide repeat-containing protein At5g50390
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0167811 |
| rosa_multiflora | Rmu_sc0003354.1_g000003 |
| rosa_samantha | Rh2AG601100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 119 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 97 |
| AluBI | AGCT | 2 cut(s) | 250, 272 |
| AluI | AGCT | 2 cut(s) | 250, 272 |
| AsuHPI | GGTGA | 1 cut(s) | 113 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 132, 164 |
| BbvCI | CCTCAGC | 2 cut(s) | 246, 268 |
| BccI | CCATC | 1 cut(s) | 211 |
| BceAI | ACGGC | 1 cut(s) | 175 |
| BclI | TGATCA | 1 cut(s) | 34 |
| BmsI | GCATC | 3 cut(s) | 7, 30, 120 |
| Bpu10I | CCTNAGC | 2 cut(s) | 246, 268 |
| BsaJI | CCNNGG | 1 cut(s) | 91 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 97 |
| BseDI | CCNNGG | 1 cut(s) | 91 |
| BseGI | GGATG | 1 cut(s) | 222 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 97 |
| BseMII | CTCAG | 2 cut(s) | 260, 282 |
| BslFI | GGGAC | 1 cut(s) | 241 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 97 |
| BsmFI | GGGAC | 1 cut(s) | 241 |
| BsmI | GAATGC | 1 cut(s) | 70 |
| Bsp143I | GATC | 1 cut(s) | 34 |
| BspCNI | CTCAG | 2 cut(s) | 259, 281 |
| BssECI | CCNNGG | 1 cut(s) | 91 |
| BssMI | GATC | 1 cut(s) | 34 |
| Bst4CI | ACNGT | 1 cut(s) | 92 |
| BstC8I | GCNNGC | 1 cut(s) | 188 |
| BstDEI | CTNAG | 2 cut(s) | 246, 268 |
| BstDSI | CCRYGG | 1 cut(s) | 91 |
| BstEII | GGTNACC | 1 cut(s) | 86 |
| BstF5I | GGATG | 1 cut(s) | 222 |
| BstKTI | GATC | 1 cut(s) | 37 |
| BstMBI | GATC | 1 cut(s) | 34 |
| BstPI | GGTNACC | 1 cut(s) | 86 |
| BtgI | CCRYGG | 1 cut(s) | 91 |
| BtsCI | GGATG | 1 cut(s) | 222 |
| Cac8I | GCNNGC | 1 cut(s) | 188 |
| CviAII | CATG | 2 cut(s) | 26, 158 |
| CviJI | RGCY | 5 cut(s) | 110, 243, 250, 265, 272 |
| CviKI_1 | RGCY | 5 cut(s) | 110, 243, 250, 265, 272 |
| DdeI | CTNAG | 2 cut(s) | 246, 268 |
| DpnI | GATC | 1 cut(s) | 36 |
| DpnII | GATC | 1 cut(s) | 34 |
| Eco57I | CTGAAG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 86 |
| EcoO65I | GGTNACC | 1 cut(s) | 86 |
| FaeI | CATG | 2 cut(s) | 29, 161 |
| FaiI | YATR | 8 cut(s) | 27, 56, 84, 159, 253, 275, 277, 289 |
| FaqI | GGGAC | 1 cut(s) | 241 |
| FatI | CATG | 2 cut(s) | 25, 157 |
| FbaI | TGATCA | 1 cut(s) | 34 |
| FokI | GGATG | 1 cut(s) | 229 |
| Hin1II | CATG | 2 cut(s) | 29, 161 |
| HphI | GGTGA | 1 cut(s) | 113 |
| Hpy188I | TCNGA | 2 cut(s) | 39, 209 |
| Hpy188III | TCNNGA | 1 cut(s) | 137 |
| HpyAV | CCTTC | 2 cut(s) | 134, 218 |
| HpyCH4III | ACNGT | 1 cut(s) | 92 |
| HpyCH4IV | ACGT | 1 cut(s) | 212 |
| HpyF3I | CTNAG | 2 cut(s) | 246, 268 |
| HpySE526I | ACGT | 1 cut(s) | 212 |
| Hsp92II | CATG | 2 cut(s) | 29, 161 |
| Ksp22I | TGATCA | 1 cut(s) | 34 |
| Kzo9I | GATC | 1 cut(s) | 34 |
| LpnPI | CCDG | 2 cut(s) | 122, 184 |
| LweI | GCATC | 3 cut(s) | 7, 30, 120 |
| MaeII | ACGT | 1 cut(s) | 212 |
| MaeIII | GTNAC | 2 cut(s) | 86, 160 |
| MalI | GATC | 1 cut(s) | 36 |
| MboI | GATC | 1 cut(s) | 34 |
| MboII | GAAGA | 2 cut(s) | 26, 139 |
| MmeI | TCCRAC | 1 cut(s) | 58 |
| MnlI | CCTC | 3 cut(s) | 100, 255, 277 |
| MseI | TTAA | 2 cut(s) | 239, 261 |
| Mva1269I | GAATGC | 1 cut(s) | 70 |
| NdeII | GATC | 1 cut(s) | 34 |
| NlaIII | CATG | 2 cut(s) | 29, 161 |
| PctI | GAATGC | 1 cut(s) | 70 |
| PspEI | GGTNACC | 1 cut(s) | 86 |
| SaqAI | TTAA | 2 cut(s) | 239, 261 |
| Sau3AI | GATC | 1 cut(s) | 34 |
| SetI | ASST | 4 cut(s) | 203, 215, 252, 274 |
| SfaNI | GCATC | 3 cut(s) | 7, 30, 120 |
| TaaI | ACNGT | 1 cut(s) | 92 |
| TaiI | ACGT | 1 cut(s) | 215 |
| Tru1I | TTAA | 2 cut(s) | 239, 261 |
| Tru9I | TTAA | 2 cut(s) | 239, 261 |