RchiOBHm_Chr2g0170111

Belongs to the aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017082
Physical Location & Seq
Reverse (-)
84111140 .. 84114069
2930 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53767

Sequence Viewer

Length: 1257 bp
ATGGATGACCTTGTTCCTTCCCGTCAGCTCTTCATCGCCGGTGAATGGAGAGAACCAGTTCTGAAGAAACGGATCCCAATCGTGAACCCTGCTACTGAAGATATTGTTGGGGACTTACCAGCTGCTACTGCTGAAGATGTGGATATTGCAGTGGATGCAGCTCGCATGGCTTTCTTCAGTAATAAAGGGAAGGATTGGGCCTCTGCTTCTGGTGCTTACCGTGCTAAGTTTCTTCGTGCCATCGCTGACATGATCTTGGAGAGGAAGTCTCTACTGGCCAAACTGGAAACCATTGATACCGGGAAGCCACTAGATGAAGCAGTATCTGATATGGAAAGTTCTGCTTCCTGTTTCAAGTATTATGCAGAACTTGCAGAAGCATTGGATTTGAAGGAAAGGACTCCTGTCTCTATAAAGCAGCAATCATTTAAGACCCATGTCCTTAAGGAACCCATTGGAGTTGTTGCCCTCATTACTCCTTGGAACTACCCTCTTTTGATGGCTGTCTGGAAGGTCGCTCCTGCTCTGGCTGCCGGATGTACCGCTATACTTAAGCCATCTGAGTTGGCATCTGTGACATGTTTGGAGTTGGCTGACATTTGCAGACAGGTGGGTCTGCCTTCTGGTGTCCTTAATGTCGTTACTGGGTTAGGCTCAGAAGTTGGTGCCCCTTTGTCATCTCATCCTCATGTCGACAAGATAGCATTTACTGGAAGTACAGCAACCGGAATCAAGGTCATGACAGCTGCAGCTCAAACTATCAAGCCTGTATCATTGGAACTTGGCGGGAAGAGTCCAATTCTTGTGTTTCAGGATGCAGACCTCGATAATGCTGCAGAATGGACTATCTATGGCTGCTTTGCGACAAGTGGCCAAATCTGTAGTGCAACATCTCGTCTTCTTGTTCATGAAAGCATTGCAGCCAAATTCTTAGAAAAGCTTATTGACTGGAGTAAGAACATCAAAATCTCTGATCCCATGGAAGAAGGTTGCAGGCTTGGTTCCGTAATAAGTAAAACACAGTACGAGAAGATATTGAATTTTATTACTACAGCAAAAGGTGAAGGTGCAACCATTCTACACGGAGGTGGCCGTCCTCAACATCTGAATCAAGGATTTTTCATTGAACCAACAATCATTACAGATGTTGGCACCTCAATGTCAATATGGAAGGAGGAGGTTTTTGGACCTGTTTTATGTGTCAAAACATTTACTACAGAAGATGAAGCCCTTGAACTAGCAAATGACACTGAATGA

Protein Analysis

418

Amino Acids

45.04

Weight (kDa)

5.1

Isoelectric Point (pI)

28.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 16 - 418 6.3e-143 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74920 AT1G74920
prunus_persica Prupe.3G277000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0170111
rosa_laevigata RLG00000021922
rosa_multiflora Rmu_sc0013078.1_g000006
rosa_roxburghii Rroxscaffold_2G00081580
rosa_rugosa Rorug02G0545800.1
rosa_samantha Rh2AG617900 Rh2BG629400 Rh2CG598800 Rh2DG641200
rosa_wichuraiana Rw2G051160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 612
AccB1I GGYRCC 2 cut(s) 665, 1151
AccI GTMKAC 1 cut(s) 693
AciI CCGC 2 cut(s) 543, 786
AclWI GGATC 3 cut(s) 67, 80, 968
AcoI YGGCCR 3 cut(s) 276, 871, 1090
AcsI RAATTY 2 cut(s) 926, 1039
AcuI CTGAAG 4 cut(s) 83, 117, 153, 160
AfaI GTAC 3 cut(s) 541, 718, 1025
AfiI CCNNNNNNNGG 1 cut(s) 45
AflII CTTAAG 2 cut(s) 443, 551
AflIII ACRYGT 1 cut(s) 578
AgsI TTSAA 5 cut(s) 355, 391, 1039, 1127, 1235
AjuI GAANNNNNNNTTGG 2 cut(s) 90, 122
AleI CACNNNNGTG 1 cut(s) 1086
AluBI AGCT 6 cut(s) 28, 122, 161, 746, 752, 940
AluI AGCT 6 cut(s) 28, 122, 161, 746, 752, 940
Alw26I GTCTC 2 cut(s) 273, 412
AlwI GGATC 3 cut(s) 67, 80, 968
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 4 cut(s) 198, 276, 871, 1090
ApeKI GCWGC 9 cut(s) 122, 158, 418, 530, 746, 749, 833, 855, 920
ApoI RAATTY 2 cut(s) 926, 1039
Asp700I GAANNNNTTC 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 198, 1187
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 2 cut(s) 53, 1073
AvaII GGWCC 1 cut(s) 1187
BaeGI GKGCMC 1 cut(s) 670
BalI TGGCCA 2 cut(s) 278, 873
BamHI GGATCC 1 cut(s) 72
BanI GGYRCC 2 cut(s) 665, 1151
BbsI GAAGAC 1 cut(s) 890
BbvI GCAGC 9 cut(s) 109, 170, 430, 517, 733, 761, 820, 842, 932
BccI CCATC 3 cut(s) 248, 493, 565
BceAI ACGGC 1 cut(s) 1077
BcgI CGANNNNNNTGC 2 cut(s) 815, 849
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 273, 412
BfaI CTAG 2 cut(s) 311, 1238
BfmI CTRYAG 5 cut(s) 747, 834, 880, 1050, 1215
BfrI CTTAAG 2 cut(s) 443, 551
BisI GCNGC 9 cut(s) 123, 159, 419, 531, 747, 750, 834, 856, 921
BlsI GCNGC 9 cut(s) 124, 160, 420, 532, 748, 751, 835, 857, 922
Bme1390I CCNGG 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 1187
BmgT120I GGNCC 2 cut(s) 198, 1187
BmiI GGNNCC 5 cut(s) 74, 450, 667, 1003, 1153
BmrFI CCNGG 1 cut(s) 301
BmrI ACTGGG 1 cut(s) 654
BmsI GCATC 3 cut(s) 145, 578, 805
BmuI ACTGGG 1 cut(s) 654
BoxI GACNNNNGTC 2 cut(s) 404, 437
BpiI GAAGAC 1 cut(s) 890
BplI GAGNNNNNCTC 2 cut(s) 253, 285
BpmI CTGGAG 1 cut(s) 970
BpuMI CCSGG 1 cut(s) 301
BsaBI GATNNNNATC 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 479, 978
BsaWI WCCGGW 1 cut(s) 725
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 1 cut(s) 45
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 6 cut(s) 56, 279, 288, 649, 715, 953
Bse3DI GCAATG 1 cut(s) 915
Bse8I GATNNNNATC 1 cut(s) 77
BseDI CCNNGG 2 cut(s) 479, 978
BseGI GGATG 5 cut(s) 10, 160, 542, 682, 820
BseJI GATNNNNATC 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 45
BseMI GCAATG 1 cut(s) 915
BseMII CTCAG 2 cut(s) 552, 669
BseNI ACTGG 6 cut(s) 56, 279, 288, 649, 715, 953
BseRI GAGGAG 1 cut(s) 1190
BseSI GKGCMC 1 cut(s) 670
BseXI GCAGC 9 cut(s) 109, 170, 430, 517, 733, 761, 820, 842, 932
BshFI GGCC 4 cut(s) 200, 278, 873, 1092
BshNI GGYRCC 2 cut(s) 665, 1151
BsiSI CCGG 4 cut(s) 39, 300, 534, 726
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 45
BsmAI GTCTC 2 cut(s) 273, 412
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 4 cut(s) 200, 278, 873, 1092
Bsp1286I GDGCHC 1 cut(s) 670
Bsp143I GATC 3 cut(s) 72, 252, 973
Bsp19I CCATGG 1 cut(s) 978
BspACI CCGC 2 cut(s) 543, 786
BspANI GGCC 4 cut(s) 200, 278, 873, 1092
BspCNI CTCAG 2 cut(s) 553, 668
BspHI TCATGA 2 cut(s) 738, 907
BspLI GGNNCC 5 cut(s) 74, 450, 667, 1003, 1153
BspMAI CTGCAG 2 cut(s) 751, 838
BspPI GGATC 3 cut(s) 67, 80, 968
BspQI GCTCTTC 1 cut(s) 35
BspT107I GGYRCC 2 cut(s) 665, 1151
BspTI CTTAAG 2 cut(s) 443, 551
BsrDI GCAATG 1 cut(s) 915
BsrFI RCCGGY 1 cut(s) 38
BsrI ACTGG 6 cut(s) 56, 279, 288, 649, 715, 953
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 479, 978
BssMI GATC 3 cut(s) 72, 252, 973
BssT1I CCWWGG 2 cut(s) 479, 978
Bst4CI ACNGT 2 cut(s) 221, 1023
Bst6I CTCTTC 2 cut(s) 35, 785
BstAFI CTTAAG 2 cut(s) 443, 551
BstAPI GCANNNNNTGC 2 cut(s) 155, 371
BstC8I GCNNGC 2 cut(s) 163, 995
BstDEI CTNAG 4 cut(s) 225, 561, 655, 931
BstDSI CCRYGG 1 cut(s) 978
BstF5I GGATG 5 cut(s) 10, 160, 542, 682, 820
BstKTI GATC 3 cut(s) 75, 255, 976
BstMAI GTCTC 2 cut(s) 273, 412
BstMBI GATC 3 cut(s) 72, 252, 973
BstMWI GCNNNNNNNGC 7 cut(s) 128, 155, 167, 212, 221, 371, 530
BstNSI RCATGY 1 cut(s) 582
BstPAI GACNNNNGTC 2 cut(s) 404, 437
BstSCI CCNGG 1 cut(s) 299
BstSFI CTRYAG 5 cut(s) 747, 834, 880, 1050, 1215
BstSLI GKGCMC 1 cut(s) 670
BstV1I GCAGC 9 cut(s) 109, 170, 430, 517, 733, 761, 820, 842, 932
BstV2I GAAGAC 1 cut(s) 890
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
BsuRI GGCC 4 cut(s) 200, 278, 873, 1092
BtgI CCRYGG 1 cut(s) 978
BtgZI GCGATG 2 cut(s) 19, 226
BtsCI GGATG 5 cut(s) 10, 160, 542, 682, 820
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 156, 1248
Cac8I GCNNGC 2 cut(s) 163, 995
CaiI CAGNNNCTG 1 cut(s) 326
CciI TCATGA 2 cut(s) 738, 907
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 198, 1187
Csp6I GTAC 3 cut(s) 540, 717, 1024
CviAII CATG 8 cut(s) 166, 250, 437, 579, 689, 739, 908, 979
CviQI GTAC 3 cut(s) 540, 717, 1024
DdeI CTNAG 4 cut(s) 225, 561, 655, 931
DpnI GATC 3 cut(s) 74, 254, 975
DpnII GATC 3 cut(s) 72, 252, 973
DrdI GACNNNNNNGTC 1 cut(s) 612
DseDI GACNNNNNNGTC 1 cut(s) 612
EaeI YGGCCR 3 cut(s) 276, 871, 1090
Eam1104I CTCTTC 2 cut(s) 35, 785
EarI CTCTTC 2 cut(s) 35, 785
Eco130I CCWWGG 2 cut(s) 479, 978
Eco47I GGWCC 1 cut(s) 1187
Eco57I CTGAAG 4 cut(s) 83, 117, 153, 160
EcoT14I CCWWGG 2 cut(s) 479, 978
ErhI CCWWGG 2 cut(s) 479, 978
FaeI CATG 8 cut(s) 169, 253, 440, 582, 692, 742, 911, 982
FalI AAGNNNNNCTT 2 cut(s) 328, 360
FaqI GGGAC 1 cut(s) 125
FatI CATG 8 cut(s) 165, 249, 436, 578, 688, 738, 907, 978
FauI CCCGC 1 cut(s) 779
FblI GTMKAC 1 cut(s) 693
Fnu4HI GCNGC 9 cut(s) 123, 159, 419, 531, 747, 750, 834, 856, 921
FokI GGATG 5 cut(s) 17, 167, 549, 669, 827
Fsp4HI GCNGC 9 cut(s) 123, 159, 419, 531, 747, 750, 834, 856, 921
FspBI CTAG 2 cut(s) 311, 1238
GluI GCNGC 9 cut(s) 123, 159, 419, 531, 747, 750, 834, 856, 921
GsuI CTGGAG 1 cut(s) 970
HaeIII GGCC 4 cut(s) 200, 278, 873, 1092
HapII CCGG 4 cut(s) 39, 300, 534, 726
Hin1II CATG 8 cut(s) 169, 253, 440, 582, 692, 742, 911, 982
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HindIII AAGCTT 1 cut(s) 938
HinfI GANTC 4 cut(s) 400, 729, 793, 1108
HpaII CCGG 4 cut(s) 39, 300, 534, 726
HphI GGTGA 2 cut(s) 53, 1073
Hpy166II GTNNAC 2 cut(s) 85, 694
Hpy188I TCNGA 6 cut(s) 63, 328, 562, 658, 973, 1107
Hpy188III TCNNGA 5 cut(s) 82, 508, 739, 812, 908
Hpy8I GTNNAC 2 cut(s) 85, 694
HpyAV CCTTC 8 cut(s) 27, 184, 385, 505, 630, 980, 1058, 1165
HpyCH4III ACNGT 2 cut(s) 221, 1023
HpyF10VI GCNNNNNNNGC 7 cut(s) 128, 155, 167, 212, 221, 371, 530
HpyF3I CTNAG 4 cut(s) 225, 561, 655, 931
Hsp92II CATG 8 cut(s) 169, 253, 440, 582, 692, 742, 911, 982
Kzo9I GATC 3 cut(s) 72, 252, 973
LguI GCTCTTC 1 cut(s) 35
LmnI GCTCC 1 cut(s) 523
Lsp1109I GCAGC 9 cut(s) 109, 170, 430, 517, 733, 761, 820, 842, 932
LweI GCATC 3 cut(s) 145, 578, 805
MaeI CTAG 2 cut(s) 311, 1238
MaeIII GTNAC 2 cut(s) 574, 640
MalI GATC 3 cut(s) 74, 254, 975
MboI GATC 3 cut(s) 72, 252, 973
MflI RGATCY 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 670
MlsI TGGCCA 2 cut(s) 278, 873
MluCI AATT 3 cut(s) 798, 926, 1039
MluNI TGGCCA 2 cut(s) 278, 873
MlyI GAGTC 2 cut(s) 394, 802
Mox20I TGGCCA 2 cut(s) 278, 873
MroXI GAANNNNTTC 1 cut(s) 57
MscI TGGCCA 2 cut(s) 278, 873
MseI TTAA 4 cut(s) 429, 444, 552, 633
MslI CAYNNNNRTG 3 cut(s) 687, 1086, 1157
Msp20I TGGCCA 2 cut(s) 278, 873
MspA1I CMGCKG 2 cut(s) 122, 746
MspCI CTTAAG 2 cut(s) 443, 551
MspI CCGG 4 cut(s) 39, 300, 534, 726
MspR9I CCNGG 1 cut(s) 301
MwoI GCNNNNNNNGC 7 cut(s) 128, 155, 167, 212, 221, 371, 530
NciI CCSGG 1 cut(s) 301
NcoI CCATGG 1 cut(s) 978
NdeII GATC 3 cut(s) 72, 252, 973
NlaIII CATG 8 cut(s) 169, 253, 440, 582, 692, 742, 911, 982
NlaIV GGNNCC 5 cut(s) 74, 450, 667, 1003, 1153
NmuCI GTSAC 1 cut(s) 574
NspI RCATGY 1 cut(s) 582
OliI CACNNNNGTG 1 cut(s) 1086
PagI TCATGA 2 cut(s) 738, 907
PciI ACATGT 1 cut(s) 578
PciSI GCTCTTC 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 729, 1108
PkrI GCNGC 9 cut(s) 124, 160, 420, 532, 748, 751, 835, 857, 922
PleI GAGTC 2 cut(s) 394, 801
PpsI GAGTC 2 cut(s) 394, 801
PscI ACATGT 1 cut(s) 578
PshAI GACNNNNGTC 2 cut(s) 404, 437
PspN4I GGNNCC 5 cut(s) 74, 450, 667, 1003, 1153
PspPI GGNCC 2 cut(s) 198, 1187
PstI CTGCAG 2 cut(s) 751, 838
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 72
PvuII CAGCTG 2 cut(s) 122, 746
RsaI GTAC 3 cut(s) 541, 718, 1025
RsaNI GTAC 3 cut(s) 540, 717, 1024
RseI CAYNNNNRTG 3 cut(s) 687, 1086, 1157
SalI GTCGAC 1 cut(s) 692
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 4 cut(s) 429, 444, 552, 633
SatI GCNGC 9 cut(s) 123, 159, 419, 531, 747, 750, 834, 856, 921
Sau3AI GATC 3 cut(s) 72, 252, 973
Sau96I GGNCC 2 cut(s) 198, 1187
SchI GAGTC 2 cut(s) 394, 802
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 1 cut(s) 670
SfaNI GCATC 3 cut(s) 145, 578, 805
SfcI CTRYAG 5 cut(s) 747, 834, 880, 1050, 1215
SgrAI CRCCGGYG 1 cut(s) 38
SinI GGWCC 1 cut(s) 1187
SmiMI CAYNNNNRTG 3 cut(s) 687, 1086, 1157
SmlI CTYRAG 2 cut(s) 443, 551
SmoI CTYRAG 2 cut(s) 443, 551
Sse9I AATT 3 cut(s) 798, 926, 1039
SsiI CCGC 2 cut(s) 543, 786
SspMI CTAG 2 cut(s) 311, 1238
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 2 cut(s) 479, 978
TaaI ACNGT 2 cut(s) 221, 1023
TaqI TCGA 2 cut(s) 693, 825
TasI AATT 3 cut(s) 798, 926, 1039
TatI WGTACW 1 cut(s) 716
TfiI GAWTC 2 cut(s) 729, 1108
Tru1I TTAA 4 cut(s) 429, 444, 552, 633
Tru9I TTAA 4 cut(s) 429, 444, 552, 633
TscAI CASTG 2 cut(s) 156, 1255
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 9 cut(s) 122, 158, 418, 530, 746, 749, 833, 855, 920
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 6 cut(s) 22, 330, 896, 924, 1111, 1239
TspGWI ACGGA 3 cut(s) 85, 994, 1098
TspRI CASTG 2 cut(s) 156, 1255
Vha464I CTTAAG 2 cut(s) 443, 551
VpaK11BI GGWCC 1 cut(s) 1187
XapI RAATTY 2 cut(s) 926, 1039
XceI RCATGY 1 cut(s) 582
XmiI GTMKAC 1 cut(s) 693
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 2 cut(s) 311, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.