Rh2BG629400

Belongs to the aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017082
Physical Location & Seq
Reverse (-)
85135495 .. 85138952
3458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG629400.1

Sequence Viewer

Length: 1512 bp
ATGGATGACCTTGTTCCTTCCCGTCAGCTCTTCATCGCCGGTGAATGGAGAGAACCAGTTCTGAAGAAACGGATCCCAATCGTGAACCCTGCTACTGAAGATATTGTTGGGGACTTACCAGCTGCTACTGCTGAAGATGTGGATATTGCAGTGGATGCAGCTCGCATGGCTTTCTTCAGTAATAAAGGGAAGGATTGGGCCTCTGCTTCTGGTGCTTATCGTGCTAAGTTTCTTCGTGCCATCGCTGACATGATCTTGGAGAGGAAGTCTCTACTGGCCAAACTGGAAACCATTGATACCGGGAAGCCACTAGATGAAGCAGTATCTGATATGGAAAGTTCTGCTTCCTGTTTCAAGTATTATGCAGAACTTGCAGAAGCATTGGATTTGAAGGAAAGGACTCCTGTCTCTATAAAGCAGCAATCATTTAAGACCCATGTCCTTAAGGAACCCATTGGAGTTGTTGCCCTCATTACTCCTTGGAACTACCCTCTTTTGATGGCTGTCTGGAAGGTCGCTCCTGCTCTGGCTGCCGGATGTACCACTATACTTAAGCCATCTGAGTTGGCATCTGTGACGTGTTTGGAGTTGGCTGACATCTGCAGACAGGTGGGTCTGCCTTCTGGTGTCCTTAATGTCGTTACTGGGTTAGGCTCAGAAGTTGGTGCCCCTTTGTCATCTCATCCTCATGTCGACAAGATAGCATTTACTGGAAGTACAGCAACCGGAATCAAGGTCATGACAGCTGCAGCTCAAACTATCAAGCCTGTGTCATTGGAACTTGGCGGGAAGAGTCCAATTCTTGTGTTTCAGGATGCAGACCTCGATAATGCTGCAGAATGGACTATCTATGGCTGCTTTGCGACAAGTGGCCAAATCTGTAGTGCAACATCTCGTCTTCTTGTTCATGAAAGCATTGCAGCCAAATTCTTAGAAAAGCTTATTGACTGGAGTAAGAACATCAAAATCTCTGATCCCATGGAAGAAGGTTGCAGGCTTGGTTCCGTAATAAGTAAAACACAGTACGAGAAGATATTGAATTTTATTACTACAGCAAAAGGTGAAGGTGCAACCATTCTACACGGAGGTGGCCGTCCTCAACATCTGAATCAAGGATTTTTCATTGAACCAACAATCATTACAGATGTTGACACCTCAATGTCAATATGGAAGGAGGAGGTTTTTGGACCTGTTTTATGTGTCAAAACATTTACTACAGAAGATGAAGCCCTTGAACTAGCAAATGACACTGATTATGGTTTGGGAGCTGCAGTGATTTCTAAGGATCCAGAAAGGTGTGAACGCTTCGCCAAGGCTATTCAGTCAGGGGTTGTATGGAAAAACTGCTCACAACCCTGCTTTAATGAAGCCCCTTGGGGAGGAAAAAAGCGCAGCGGAATTGGGCGCGAATTAGGAGAATGGGGTCTGGAAAGCTACTTGAGCATAAAGCAGGTGACTGAGTACACCAGTGATGAGCCATACGGGTGGTATTCCCCTCCCAAGAAGCAGTGA

Protein Analysis

503

Amino Acids

54.64

Weight (kDa)

5.23

Isoelectric Point (pI)

29.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 16 - 485 3.3e-168 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74920 AT1G74920
prunus_persica Prupe.3G277000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0170111
rosa_laevigata RLG00000021922
rosa_multiflora Rmu_sc0013078.1_g000006
rosa_roxburghii Rroxscaffold_2G00081580
rosa_rugosa Rorug02G0545800.1
rosa_samantha Rh2AG617900 Rh2BG629400 Rh2CG598800 Rh2DG641200
rosa_wichuraiana Rw2G051160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1441
AasI GACNNNNNNGTC 1 cut(s) 612
Acc36I ACCTGC 1 cut(s) 1441
AccB1I GGYRCC 1 cut(s) 665
AccI GTMKAC 1 cut(s) 693
AccII CGCG 1 cut(s) 1407
AciI CCGC 2 cut(s) 786, 1395
AclWI GGATC 5 cut(s) 67, 80, 968, 1280, 1293
AcoI YGGCCR 3 cut(s) 276, 871, 1090
AcsI RAATTY 2 cut(s) 926, 1039
AcuI CTGAAG 4 cut(s) 83, 117, 153, 160
AfaI GTAC 4 cut(s) 541, 718, 1025, 1463
AfiI CCNNNNNNNGG 2 cut(s) 45, 1379
AflII CTTAAG 2 cut(s) 443, 551
AflIII ACRYGT 1 cut(s) 578
AgsI TTSAA 5 cut(s) 355, 391, 1039, 1127, 1235
AjiI CACGTC 1 cut(s) 579
AjuI GAANNNNNNNTTGG 2 cut(s) 90, 122
AleI CACNNNNGTG 1 cut(s) 1086
AluBI AGCT 8 cut(s) 28, 122, 161, 746, 752, 940, 1268, 1434
AluI AGCT 8 cut(s) 28, 122, 161, 746, 752, 940, 1268, 1434
Alw26I GTCTC 2 cut(s) 273, 412
AlwI GGATC 5 cut(s) 67, 80, 968, 1280, 1293
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 4 cut(s) 198, 276, 871, 1090
ApoI RAATTY 2 cut(s) 926, 1039
Asp700I GAANNNNTTC 1 cut(s) 57
AspLEI GCGC 2 cut(s) 1392, 1407
AspS9I GGNCC 2 cut(s) 198, 1187
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 3 cut(s) 53, 1073, 1465
AvaII GGWCC 1 cut(s) 1187
BaeGI GKGCMC 1 cut(s) 670
BalI TGGCCA 2 cut(s) 278, 873
BamHI GGATCC 2 cut(s) 72, 1285
BanI GGYRCC 1 cut(s) 665
BbsI GAAGAC 1 cut(s) 890
BccI CCATC 3 cut(s) 248, 493, 565
BceAI ACGGC 1 cut(s) 1077
BcgI CGANNNNNNTGC 2 cut(s) 815, 849
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 273, 412
BfaI CTAG 2 cut(s) 311, 1238
BfmI CTRYAG 7 cut(s) 601, 747, 834, 880, 1050, 1215, 1269
BfrI CTTAAG 2 cut(s) 443, 551
BfuAI ACCTGC 1 cut(s) 1441
Bme1390I CCNGG 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 1187
BmgBI CACGTC 1 cut(s) 579
BmgT120I GGNCC 2 cut(s) 198, 1187
BmiI GGNNCC 5 cut(s) 74, 450, 667, 1003, 1287
BmrFI CCNGG 1 cut(s) 301
BmrI ACTGGG 1 cut(s) 654
BmsI GCATC 3 cut(s) 145, 578, 805
BmuI ACTGGG 1 cut(s) 654
BoxI GACNNNNGTC 2 cut(s) 404, 437
BpiI GAAGAC 1 cut(s) 890
BplI GAGNNNNNCTC 2 cut(s) 253, 285
BpmI CTGGAG 1 cut(s) 970
BpuEI CTTGAG 1 cut(s) 1459
BpuMI CCSGG 1 cut(s) 301
BsaBI GATNNNNATC 1 cut(s) 77
BsaJI CCNNGG 4 cut(s) 479, 978, 1311, 1373
BsaWI WCCGGW 1 cut(s) 725
BsaXI ACNNNNNCTCC 4 cut(s) 251, 281, 1257, 1287
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 1379
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 7 cut(s) 56, 279, 288, 649, 715, 953, 1467
Bse3DI GCAATG 1 cut(s) 915
Bse8I GATNNNNATC 1 cut(s) 77
BseDI CCNNGG 4 cut(s) 479, 978, 1311, 1373
BseGI GGATG 5 cut(s) 10, 160, 542, 682, 820
BseJI GATNNNNATC 1 cut(s) 77
BseLI CCNNNNNNNGG 2 cut(s) 45, 1379
BseMI GCAATG 1 cut(s) 915
BseMII CTCAG 3 cut(s) 552, 669, 1449
BseNI ACTGG 7 cut(s) 56, 279, 288, 649, 715, 953, 1467
BseRI GAGGAG 1 cut(s) 1190
BseSI GKGCMC 1 cut(s) 670
Bsh1236I CGCG 1 cut(s) 1407
BshFI GGCC 4 cut(s) 200, 278, 873, 1092
BshNI GGYRCC 1 cut(s) 665
BsiSI CCGG 4 cut(s) 39, 300, 534, 726
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 45, 1379
BsmAI GTCTC 2 cut(s) 273, 412
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 4 cut(s) 200, 278, 873, 1092
Bsp1286I GDGCHC 1 cut(s) 670
Bsp143I GATC 4 cut(s) 72, 252, 973, 1285
Bsp19I CCATGG 1 cut(s) 978
BspACI CCGC 2 cut(s) 786, 1395
BspANI GGCC 4 cut(s) 200, 278, 873, 1092
BspCNI CTCAG 3 cut(s) 553, 668, 1450
BspFNI CGCG 1 cut(s) 1407
BspHI TCATGA 2 cut(s) 738, 907
BspLI GGNNCC 5 cut(s) 74, 450, 667, 1003, 1287
BspMAI CTGCAG 4 cut(s) 605, 751, 838, 1273
BspMI ACCTGC 1 cut(s) 1441
BspPI GGATC 5 cut(s) 67, 80, 968, 1280, 1293
BspQI GCTCTTC 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 665
BspTI CTTAAG 2 cut(s) 443, 551
BsrDI GCAATG 1 cut(s) 915
BsrFI RCCGGY 1 cut(s) 38
BsrI ACTGG 7 cut(s) 56, 279, 288, 649, 715, 953, 1467
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 4 cut(s) 479, 978, 1311, 1373
BssMI GATC 4 cut(s) 72, 252, 973, 1285
BssT1I CCWWGG 4 cut(s) 479, 978, 1311, 1373
Bst4CI ACNGT 1 cut(s) 1023
Bst6I CTCTTC 2 cut(s) 35, 785
BstAFI CTTAAG 2 cut(s) 443, 551
BstAPI GCANNNNNTGC 2 cut(s) 155, 371
BstC8I GCNNGC 2 cut(s) 163, 995
BstDEI CTNAG 6 cut(s) 225, 561, 655, 931, 1281, 1458
BstDSI CCRYGG 1 cut(s) 978
BstENI CCTNNNNNAGG 1 cut(s) 1377
BstF5I GGATG 5 cut(s) 10, 160, 542, 682, 820
BstFNI CGCG 1 cut(s) 1407
BstHHI GCGC 2 cut(s) 1392, 1407
BstKTI GATC 4 cut(s) 75, 255, 976, 1288
BstMAI GTCTC 2 cut(s) 273, 412
BstMBI GATC 4 cut(s) 72, 252, 973, 1285
BstMWI GCNNNNNNNGC 8 cut(s) 128, 155, 167, 212, 221, 371, 530, 1440
BstPAI GACNNNNGTC 2 cut(s) 404, 437
BstSCI CCNGG 1 cut(s) 299
BstSFI CTRYAG 7 cut(s) 601, 747, 834, 880, 1050, 1215, 1269
BstSLI GKGCMC 1 cut(s) 670
BstUI CGCG 1 cut(s) 1407
BstV2I GAAGAC 1 cut(s) 890
BstX2I RGATCY 2 cut(s) 72, 1285
BstXI CCANNNNNNTGG 1 cut(s) 1485
BstYI RGATCY 2 cut(s) 72, 1285
BsuRI GGCC 4 cut(s) 200, 278, 873, 1092
BtgI CCRYGG 1 cut(s) 978
BtgZI GCGATG 2 cut(s) 19, 226
BtrI CACGTC 1 cut(s) 579
BtsCI GGATG 5 cut(s) 10, 160, 542, 682, 820
BtsI GCAGTG 2 cut(s) 156, 1278
BtsIMutI CAGTG 4 cut(s) 156, 1248, 1278, 1474
BveI ACCTGC 1 cut(s) 1441
Cac8I GCNNGC 2 cut(s) 163, 995
CaiI CAGNNNCTG 1 cut(s) 326
CciI TCATGA 2 cut(s) 738, 907
CfoI GCGC 2 cut(s) 1392, 1407
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 198, 1187
Csp6I GTAC 4 cut(s) 540, 717, 1024, 1462
CviAII CATG 7 cut(s) 166, 250, 437, 689, 739, 908, 979
CviQI GTAC 4 cut(s) 540, 717, 1024, 1462
DdeI CTNAG 6 cut(s) 225, 561, 655, 931, 1281, 1458
DpnI GATC 4 cut(s) 74, 254, 975, 1287
DpnII GATC 4 cut(s) 72, 252, 973, 1285
DrdI GACNNNNNNGTC 1 cut(s) 612
DseDI GACNNNNNNGTC 1 cut(s) 612
EaeI YGGCCR 3 cut(s) 276, 871, 1090
Eam1104I CTCTTC 2 cut(s) 35, 785
EarI CTCTTC 2 cut(s) 35, 785
Eco130I CCWWGG 4 cut(s) 479, 978, 1311, 1373
Eco47I GGWCC 1 cut(s) 1187
Eco57I CTGAAG 4 cut(s) 83, 117, 153, 160
EcoNI CCTNNNNNAGG 1 cut(s) 1377
EcoT14I CCWWGG 4 cut(s) 479, 978, 1311, 1373
ErhI CCWWGG 4 cut(s) 479, 978, 1311, 1373
FaeI CATG 7 cut(s) 169, 253, 440, 692, 742, 911, 982
FalI AAGNNNNNCTT 2 cut(s) 328, 360
FaqI GGGAC 1 cut(s) 125
FatI CATG 7 cut(s) 165, 249, 436, 688, 738, 907, 978
FauI CCCGC 1 cut(s) 779
FblI GTMKAC 1 cut(s) 693
FokI GGATG 5 cut(s) 17, 167, 549, 669, 827
FspBI CTAG 2 cut(s) 311, 1238
GlaI GCGC 2 cut(s) 1391, 1406
GsuI CTGGAG 1 cut(s) 970
HaeIII GGCC 4 cut(s) 200, 278, 873, 1092
HapII CCGG 4 cut(s) 39, 300, 534, 726
HhaI GCGC 2 cut(s) 1392, 1407
Hin1II CATG 7 cut(s) 169, 253, 440, 692, 742, 911, 982
Hin6I GCGC 2 cut(s) 1390, 1405
HinP1I GCGC 2 cut(s) 1390, 1405
HincII GTYRAC 2 cut(s) 694, 1150
HindII GTYRAC 2 cut(s) 694, 1150
HindIII AAGCTT 1 cut(s) 938
HinfI GANTC 4 cut(s) 400, 729, 793, 1108
HpaII CCGG 4 cut(s) 39, 300, 534, 726
HphI GGTGA 3 cut(s) 53, 1073, 1465
Hpy166II GTNNAC 5 cut(s) 85, 694, 1150, 1301, 1464
Hpy188I TCNGA 6 cut(s) 63, 328, 562, 658, 973, 1107
Hpy188III TCNNGA 7 cut(s) 82, 508, 739, 812, 908, 1289, 1427
Hpy8I GTNNAC 5 cut(s) 85, 694, 1150, 1301, 1464
HpyAV CCTTC 8 cut(s) 27, 184, 385, 505, 630, 980, 1058, 1165
HpyCH4III ACNGT 1 cut(s) 1023
HpyCH4IV ACGT 1 cut(s) 578
HpyF10VI GCNNNNNNNGC 8 cut(s) 128, 155, 167, 212, 221, 371, 530, 1440
HpyF3I CTNAG 6 cut(s) 225, 561, 655, 931, 1281, 1458
HpySE526I ACGT 1 cut(s) 578
Hsp92II CATG 7 cut(s) 169, 253, 440, 692, 742, 911, 982
HspAI GCGC 2 cut(s) 1390, 1405
Kzo9I GATC 4 cut(s) 72, 252, 973, 1285
LguI GCTCTTC 1 cut(s) 35
LmnI GCTCC 2 cut(s) 523, 1265
LweI GCATC 3 cut(s) 145, 578, 805
MaeI CTAG 2 cut(s) 311, 1238
MaeII ACGT 1 cut(s) 578
MaeIII GTNAC 3 cut(s) 574, 640, 1453
MalI GATC 4 cut(s) 74, 254, 975, 1287
MboI GATC 4 cut(s) 72, 252, 973, 1285
MflI RGATCY 2 cut(s) 72, 1285
MhlI GDGCHC 1 cut(s) 670
MlsI TGGCCA 2 cut(s) 278, 873
MluCI AATT 5 cut(s) 798, 926, 1039, 1398, 1409
MluNI TGGCCA 2 cut(s) 278, 873
MlyI GAGTC 2 cut(s) 394, 802
Mox20I TGGCCA 2 cut(s) 278, 873
MroXI GAANNNNTTC 1 cut(s) 57
MscI TGGCCA 2 cut(s) 278, 873
MseI TTAA 5 cut(s) 429, 444, 552, 633, 1362
MslI CAYNNNNRTG 4 cut(s) 687, 1086, 1157, 1483
Msp20I TGGCCA 2 cut(s) 278, 873
MspA1I CMGCKG 3 cut(s) 122, 746, 1395
MspCI CTTAAG 2 cut(s) 443, 551
MspI CCGG 4 cut(s) 39, 300, 534, 726
MspR9I CCNGG 1 cut(s) 301
MvnI CGCG 1 cut(s) 1407
MwoI GCNNNNNNNGC 8 cut(s) 128, 155, 167, 212, 221, 371, 530, 1440
NciI CCSGG 1 cut(s) 301
NcoI CCATGG 1 cut(s) 978
NdeII GATC 4 cut(s) 72, 252, 973, 1285
NlaIII CATG 7 cut(s) 169, 253, 440, 692, 742, 911, 982
NlaIV GGNNCC 5 cut(s) 74, 450, 667, 1003, 1287
NmuCI GTSAC 2 cut(s) 574, 1453
OliI CACNNNNGTG 1 cut(s) 1086
PagI TCATGA 2 cut(s) 738, 907
PaqCI CACCTGC 1 cut(s) 1441
PciSI GCTCTTC 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 729, 1108
PleI GAGTC 2 cut(s) 394, 801
PpsI GAGTC 2 cut(s) 394, 801
PshAI GACNNNNGTC 2 cut(s) 404, 437
PspN4I GGNNCC 5 cut(s) 74, 450, 667, 1003, 1287
PspPI GGNCC 2 cut(s) 198, 1187
PstI CTGCAG 4 cut(s) 605, 751, 838, 1273
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 2 cut(s) 72, 1285
PvuII CAGCTG 2 cut(s) 122, 746
RsaI GTAC 4 cut(s) 541, 718, 1025, 1463
RsaNI GTAC 4 cut(s) 540, 717, 1024, 1462
RseI CAYNNNNRTG 4 cut(s) 687, 1086, 1157, 1483
SalI GTCGAC 1 cut(s) 692
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 5 cut(s) 429, 444, 552, 633, 1362
Sau3AI GATC 4 cut(s) 72, 252, 973, 1285
Sau96I GGNCC 2 cut(s) 198, 1187
SchI GAGTC 2 cut(s) 394, 802
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 1 cut(s) 670
SfaNI GCATC 3 cut(s) 145, 578, 805
SfcI CTRYAG 7 cut(s) 601, 747, 834, 880, 1050, 1215, 1269
SgrAI CRCCGGYG 1 cut(s) 38
SinI GGWCC 1 cut(s) 1187
SmiMI CAYNNNNRTG 4 cut(s) 687, 1086, 1157, 1483
SmlI CTYRAG 3 cut(s) 443, 551, 1438
SmoI CTYRAG 3 cut(s) 443, 551, 1438
Sse9I AATT 5 cut(s) 798, 926, 1039, 1398, 1409
SsiI CCGC 2 cut(s) 786, 1395
SspMI CTAG 2 cut(s) 311, 1238
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 4 cut(s) 479, 978, 1311, 1373
TaaI ACNGT 1 cut(s) 1023
TaiI ACGT 1 cut(s) 581
TaqI TCGA 2 cut(s) 693, 825
TasI AATT 5 cut(s) 798, 926, 1039, 1398, 1409
TatI WGTACW 2 cut(s) 716, 1461
TfiI GAWTC 2 cut(s) 729, 1108
Tru1I TTAA 5 cut(s) 429, 444, 552, 633, 1362
Tru9I TTAA 5 cut(s) 429, 444, 552, 633, 1362
TscAI CASTG 4 cut(s) 156, 1255, 1278, 1474
TseFI GTSAC 2 cut(s) 574, 1453
Tsp45I GTSAC 2 cut(s) 574, 1453
TspDTI ATGAA 7 cut(s) 22, 330, 896, 924, 1111, 1239, 1380
TspGWI ACGGA 3 cut(s) 85, 994, 1098
TspRI CASTG 4 cut(s) 156, 1255, 1278, 1474
Vha464I CTTAAG 2 cut(s) 443, 551
VpaK11BI GGWCC 1 cut(s) 1187
XagI CCTNNNNNAGG 1 cut(s) 1377
XapI RAATTY 2 cut(s) 926, 1039
XmiI GTMKAC 1 cut(s) 693
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 2 cut(s) 311, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.