RchiOBHm_Chr2g0170261

metalloendoproteinase 1-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
84238550 .. 84239563
1014 bp
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UTR
Exon/CDS
Intron
PRQ53781

Sequence Viewer

Length: 348 bp
ATGGCTTCAAAATCTAGTCTTATTTCTCACTTCACACTCGCTTTCCTCCTTCTCACCCTCTTTACTCTCCTCTCTTGTGCAAATGCAGAAGAAACTCACAACAAAACATCATCCCCAGTTGAGTTCGTTGAGCATCTCAACGGGTCTCACAAAGGTGAGGTCAAAAGCATCAGTGACCTCCAAAAATTCCTTAAAAAATTTGGTTTCTTGGAGTTGAACTACAAGATCCACAATTATTCCAATGACGATGAGGATTTCGTGGAGGAAGGCATCAAGACTCTGACCACCTCTTGTTACTATGGAGTTGCATTGACATTGTTGTTGTATGGGTTTTCATATCATTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

12.98

Weight (kDa)

5.8

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0170261
rosa_multiflora Rmu_sc0012468.1_g000009
rosa_rugosa Rorug02G0547500
rosa_samantha Rh2CG600100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 2 cut(s) 185, 197
AgsI TTSAA 2 cut(s) 9, 217
AleI CACNNNNGTG 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 1 cut(s) 220
ApoI RAATTY 2 cut(s) 185, 197
ArsI GACNNNNNNTTYG 2 cut(s) 144, 176
AsuHPI GGTGA 2 cut(s) 46, 167
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 15
BmrI ACTGGG 1 cut(s) 110
BmsI GCATC 3 cut(s) 142, 177, 279
BmuI ACTGGG 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 116
BseGI GGATG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 150
Bsp143I GATC 1 cut(s) 225
BspPI GGATC 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 116
BssMI GATC 1 cut(s) 225
BstF5I GGATG 1 cut(s) 110
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BtsCI GGATG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 178
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 150
FaiI YATR 3 cut(s) 300, 327, 337
FokI GGATG 1 cut(s) 97
FspBI CTAG 1 cut(s) 15
HinfI GANTC 1 cut(s) 277
HphI GGTGA 2 cut(s) 46, 167
Hpy188I TCNGA 1 cut(s) 282
Hpy188III TCNNGA 1 cut(s) 274
HpyAV CCTTC 2 cut(s) 59, 260
HpyCH4V TGCA 3 cut(s) 80, 86, 308
Kzo9I GATC 1 cut(s) 225
LpnPI CCDG 1 cut(s) 129
LweI GCATC 3 cut(s) 142, 177, 279
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 173, 293
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 1 cut(s) 101
MflI RGATCY 1 cut(s) 225
MluCI AATT 3 cut(s) 185, 197, 232
MlyI GAGTC 1 cut(s) 271
MnlI CCTC 8 cut(s) 56, 68, 80, 151, 188, 244, 256, 298
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 153
NdeII GATC 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 173
OliI CACNNNNGTG 1 cut(s) 153
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PsuI RGATCY 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 1 cut(s) 192
Sau3AI GATC 1 cut(s) 225
SchI GAGTC 1 cut(s) 271
SetI ASST 4 cut(s) 157, 162, 180, 290
SfaNI GCATC 3 cut(s) 142, 177, 279
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 3 cut(s) 185, 197, 232
SspMI CTAG 1 cut(s) 15
TasI AATT 3 cut(s) 185, 197, 232
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 324
TspRI CASTG 1 cut(s) 178
XapI RAATTY 2 cut(s) 185, 197
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.