Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017784

Physical Location & Seq

Genomic Coordinates Reverse (-)

85786046 .. 85787926

Gene Structure 1881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53971

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCACTGAAAAATTCAGTGAAGAAAACAACATTGGGCAGGGAGGCTTTGCTATATGGTAGCTGTGCGGAAGGAAATCATAGGATATTCAAGTGTAAAATCTGCATTGGCTTGCAAGGGGGCTCGCTTACCTTCATCTTCATATTATTCACAGAGACATTAAAGCAAGCAATATTCTCCATATTCTGGTCTTGCAAAAATTCAGATTCTGGTCTTGCAAAGTTTGTCGCACCCAACTTGATCCATATTAGTACTCGTGTTGCTGGAACAGCAGGTTATTTGGCACCTCAGTATGCCATACGAGGTCAAGTGACAAAGAAAGCAGATATCTATAGTTCTGGTGTTTTAGTCTTGGAAATTGTTAGTGGGAGGTGCAACGCAAACAGATGTTTACCATCCAAAGAACACTATGGGAACGATATTAGAGGGGTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

145

Amino Acids

15.78

Weight (kDa)

9.56

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	66 - 124	3.3e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017784)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0172391 RchiOBHm_Chr2g0172421 RchiOBHm_Chr2g0172431
rosa_multiflora	Rmu_sc0000467.1_g000006
rosa_roxburghii	Rroxscaffold_2G00079880 Rroxscaffold_2G00079890
rosa_rugosa	Rorug02G0559100 Rorug02G0559100
rosa_samantha	Rh2AG634200 Rh2CG614900 Rh2DG662600 Rh5DG222600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	283
AccB7I	CCANNNNNTGG	1 cut(s)	186
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	2 cut(s)	13, 199
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	91
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	2 cut(s)	63, 435
AluI	AGCT	2 cut(s)	63, 435
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	235
AlwNI	CAGNNNCTG	1 cut(s)	209
ApoI	RAATTY	2 cut(s)	13, 199
BanI	GGYRCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	125
BauI	CACGAG	1 cut(s)	255
BccI	CCATC	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	436
BfmI	CTRYAG	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	263
BmcAI	AGTACT	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	302
BshNI	GGYRCC	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	240
BspACI	CCGC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	285
BspMI	ACCTGC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	283
BssMI	GATC	1 cut(s)	240
BssSI	CACGAG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	255
BstC8I	GCNNGC	3 cut(s)	113, 125, 168
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	395
BstKTI	GATC	1 cut(s)	243
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	240
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	395
BtsIMutI	CAGTG	2 cut(s)	5, 24
BveI	ACCTGC	1 cut(s)	263
Cac8I	GCNNGC	3 cut(s)	113, 125, 168
CaiI	CAGNNNCTG	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	252
CviJI	RGCY	5 cut(s)	47, 63, 111, 123, 435
CviKI_1	RGCY	5 cut(s)	47, 63, 111, 123, 435
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	328
EcoRV	GATATC	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	125
FokI	GGATG	1 cut(s)	382
FriOI	GRGCYC	1 cut(s)	125
FspBI	CTAG	1 cut(s)	436
HinfI	GANTC	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	392
HpyAV	CCTTC	2 cut(s)	65, 142
HpyCH4V	TGCA	5 cut(s)	105, 115, 195, 218, 375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	288
Kzo9I	GATC	1 cut(s)	240
LpnPI	CCDG	6 cut(s)	25, 172, 195, 249, 258, 324
MaeI	CTAG	1 cut(s)	436
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MboII	GAAGA	2 cut(s)	34, 130
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	3 cut(s)	13, 199, 357
MnlI	CCTC	5 cut(s)	37, 296, 297, 363, 419
MseI	TTAA	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	1 cut(s)	240
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	206
PflMI	CCANNNNNTGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	285
PstNI	CAGNNNCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	240
ScaI	AGTACT	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	7 cut(s)	65, 134, 277, 289, 307, 374, 437
SfcI	CTRYAG	1 cut(s)	331
Sse9I	AATT	3 cut(s)	13, 199, 357
SsiI	CCGC	1 cut(s)	68
SspI	AATATT	1 cut(s)	174
SspMI	CTAG	1 cut(s)	436
TasI	AATT	3 cut(s)	13, 199, 357
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	2 cut(s)	12, 24
TseFI	GTSAC	1 cut(s)	310
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	124, 130
TspRI	CASTG	2 cut(s)	12, 24
Van91I	CCANNNNNTGG	1 cut(s)	186
XapI	RAATTY	2 cut(s)	13, 199
XspI	CTAG	1 cut(s)	436
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.