Rh5DG222600
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
25031186 .. 25034440
3255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG222600.1

Sequence Viewer

Length: 453 bp
ATGGCTTGTTTCTCTTGCTTGTTCAGCCAGAAGGCAGCTTCTTCAGTTAAACGGACTGTTGACATTGATGAAGGTAAGGTATGGGAACTACATGAGAGGGGTCAGCTGGTGGAGTTGGTCGATACATCATTAAATGAAGATTTGAATGTTGAGGAGGCTTGCAGATTCATGAAGATCGGTCTTCTTTGCACCCAAGACAAGCCCAAGCTCCGACCAACCATGTCTACAGTTGTTAAGATGCTGACAGGTGAGATAGACGTGAATGACGAGAAGATAGACAAACCTGGAATGCTTTCTGAGTTCATGAATCAGAGAGATTTGGCTGATGTTAAACACTCATCTTACTCACTATCGCCTTCTGGGAAGGTTCTCAATTCTTCATCTTCCTCTGAACAAATCACCACTTCATTTGCTACCATGACCTTCAATTCTATATATGACCGAAGCAATTAG

Protein Analysis

150

Amino Acids

16.75

Weight (kDa)

5.05

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 27
AgsI TTSAA 2 cut(s) 145, 427
AjiI CACGTC 1 cut(s) 259
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 3 cut(s) 38, 106, 208
AluI AGCT 3 cut(s) 38, 106, 208
ApeKI GCWGC 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 292
AsuHPI GGTGA 2 cut(s) 260, 391
BbsI GAAGAC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 285
BfmI CTRYAG 1 cut(s) 225
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 285
BmgBI CACGTC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 173
BseBI CCWGG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 47
BsmI GAATGC 1 cut(s) 294
Bsp143I GATC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 289
BspHI TCATGA 2 cut(s) 168, 303
BssMI GATC 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 2 cut(s) 58, 229
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 297
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 47
BstV2I GAAGAC 1 cut(s) 173
BtrI CACGTC 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 160
CciI TCATGA 2 cut(s) 168, 303
CspCI CAANNNNNGTGG 2 cut(s) 391, 426
CviAII CATG 5 cut(s) 92, 169, 220, 304, 418
CviJI RGCY 8 cut(s) 5, 27, 38, 106, 158, 202, 208, 323
CviKI_1 RGCY 8 cut(s) 5, 27, 38, 106, 158, 202, 208, 323
DdeI CTNAG 1 cut(s) 297
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 283
FaeI CATG 5 cut(s) 95, 172, 223, 307, 421
FaiI YATR 9 cut(s) 82, 93, 170, 221, 305, 419, 434, 436, 438
FatI CATG 5 cut(s) 91, 168, 219, 303, 417
FblI GTMKAC 1 cut(s) 224
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
Hin1II CATG 5 cut(s) 95, 172, 223, 307, 421
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 2 cut(s) 165, 307
HphI GGTGA 2 cut(s) 260, 391
Hpy166II GTNNAC 2 cut(s) 61, 225
Hpy188I TCNGA 4 cut(s) 212, 298, 312, 391
Hpy188III TCNNGA 2 cut(s) 169, 304
Hpy8I GTNNAC 2 cut(s) 61, 225
HpyAV CCTTC 5 cut(s) 25, 65, 358, 366, 433
HpyCH4III ACNGT 2 cut(s) 58, 229
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 162, 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 5 cut(s) 95, 172, 223, 307, 421
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 6 cut(s) 41, 92, 231, 270, 297, 345
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 1 cut(s) 228
MaeII ACGT 1 cut(s) 258
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 7 cut(s) 33, 149, 173, 184, 283, 369, 375
MluCI AATT 3 cut(s) 373, 427, 448
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 4 cut(s) 90, 145, 148, 397
MroXI GAANNNNTTC 1 cut(s) 292
MseI TTAA 4 cut(s) 48, 131, 234, 330
MspA1I CMGCKG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 294
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 24
NdeII GATC 1 cut(s) 174
NlaIII CATG 5 cut(s) 95, 172, 223, 307, 421
PagI TCATGA 2 cut(s) 168, 303
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PctI GAATGC 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 292
PfeI GAWTC 2 cut(s) 165, 307
PkrI GCNGC 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PvuII CAGCTG 1 cut(s) 106
SaqAI TTAA 4 cut(s) 48, 131, 234, 330
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 285
SfaNI GCATC 1 cut(s) 228
SfcI CTRYAG 1 cut(s) 225
Sse9I AATT 3 cut(s) 373, 427, 448
StyD4I CCNGG 1 cut(s) 283
TaaI ACNGT 2 cut(s) 58, 229
TaiI ACGT 1 cut(s) 261
TaqI TCGA 1 cut(s) 120
TaqII GACCGA 1 cut(s) 167
TasI AATT 3 cut(s) 373, 427, 448
TfiI GAWTC 2 cut(s) 165, 307
Tru1I TTAA 4 cut(s) 48, 131, 234, 330
Tru9I TTAA 4 cut(s) 48, 131, 234, 330
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 8 cut(s) 84, 150, 157, 185, 292, 320, 369, 396
TspGWI ACGGA 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.