Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0017784

Physical Location & Seq

Genomic Coordinates Reverse (-)

86000804 .. 86002856

Gene Structure 2053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG634200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGTGCACTTGTTTTCAACTTTCAAGCATTTCAAATCTCAAACTGTACACTTGCAACAACTTGTGAAATGCCACTGAAAAATTCAGTGAAGAAAATAACATTGGGCAGGGAGGCTTTGGGAACACTTGAGAATGGCTCTGTGACAGCAGTAAAGGTATTGTCAGGAGATTCTAGGCAAGGGTCGTATGAATTTTTGACAGAAACTGAGGTATGGGAACTATATGAGGGGGGTCAGCTGGTGGTGTTGGTCGATACATCATCATTAAATGAAGGTTTGAATGTTGAGGAGGCTTGCAGATCCACGAAGATTGATCTTCTTTGCACCCAAGACAAGCCCAAGCTCCGACCATCCATGTCTACGGTTGTTAAGATGCTGACAGGTGAGACAGACGTGGCCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

134

Amino Acids

14.5

Weight (kDa)

4.74

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017784)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0172391 RchiOBHm_Chr2g0172421 RchiOBHm_Chr2g0172431
rosa_multiflora	Rmu_sc0000467.1_g000006
rosa_roxburghii	Rroxscaffold_2G00079880 Rroxscaffold_2G00079890
rosa_rugosa	Rorug02G0559100 Rorug02G0559100
rosa_samantha	Rh2AG634200 Rh2CG614900 Rh2DG662600 Rh5DG222600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	359
AclWI	GGATC	1 cut(s)	294
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	2 cut(s)	82, 191
AfaI	GTAC	1 cut(s)	49
AgsI	TTSAA	4 cut(s)	19, 26, 35, 280
AjiI	CACGTC	1 cut(s)	394
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	2 cut(s)	238, 343
AluI	AGCT	2 cut(s)	238, 343
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	380
Alw44I	GTGCAC	1 cut(s)	6
AlwI	GGATC	1 cut(s)	294
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	396
ApaLI	GTGCAC	1 cut(s)	6
ApoI	RAATTY	2 cut(s)	82, 191
AsuHPI	GGTGA	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	10
BccI	CCATC	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	1 cut(s)	174
BmgBI	CACGTC	1 cut(s)	394
BmsI	GCATC	1 cut(s)	363
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpuEI	CTTGAG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	302
BseSI	GKGCMC	1 cut(s)	10
BshFI	GGCC	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	399
BsmAI	GTCTC	1 cut(s)	380
BsnI	GGCC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp1407I	TGTACA	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	299, 313
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	294
BsrGI	TGTACA	1 cut(s)	47
BssMI	GATC	2 cut(s)	299, 313
Bst4CI	ACNGT	2 cut(s)	47, 364
BstAUI	TGTACA	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	350
BstKTI	GATC	2 cut(s)	302, 316
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	2 cut(s)	299, 313
BstSLI	GKGCMC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	398
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	350
BtsIMutI	CAGTG	2 cut(s)	74, 93
Cac8I	GCNNGC	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	48
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	7 cut(s)	116, 138, 238, 293, 337, 343, 398
CviKI_1	RGCY	7 cut(s)	116, 138, 238, 293, 337, 343, 398
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	2 cut(s)	301, 315
DpnII	GATC	2 cut(s)	299, 313
EaeI	YGGCCR	1 cut(s)	396
FaeI	CATG	1 cut(s)	358
FaiI	YATR	5 cut(s)	189, 214, 223, 225, 356
FatI	CATG	1 cut(s)	354
FblI	GTMKAC	1 cut(s)	359
FokI	GGATG	1 cut(s)	337
FspBI	CTAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	1 cut(s)	399
Hin1II	CATG	1 cut(s)	358
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	3 cut(s)	8, 50, 360
Hpy188I	TCNGA	1 cut(s)	347
Hpy188III	TCNNGA	1 cut(s)	165
Hpy8I	GTNNAC	3 cut(s)	8, 50, 360
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	2 cut(s)	47, 364
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	4 cut(s)	8, 56, 297, 324
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	299, 313
LmnI	GCTCC	1 cut(s)	348
LpnPI	CCDG	4 cut(s)	94, 150, 224, 366
LweI	GCATC	1 cut(s)	363
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	2 cut(s)	301, 315
MboI	GATC	2 cut(s)	299, 313
MboII	GAAGA	3 cut(s)	103, 308, 319
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	2 cut(s)	82, 191
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	5 cut(s)	106, 202, 220, 280, 283
MseI	TTAA	2 cut(s)	266, 369
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	1 cut(s)	399
NdeII	GATC	2 cut(s)	299, 313
NlaIII	CATG	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	170
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	238
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	266, 369
Sau3AI	GATC	2 cut(s)	299, 313
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	7 cut(s)	159, 213, 240, 277, 345, 385, 396
SfaNI	GCATC	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	82, 191
SspMI	CTAG	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	47, 364
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	252
TasI	AATT	2 cut(s)	82, 191
TatI	WGTACW	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	2 cut(s)	266, 369
Tru9I	TTAA	2 cut(s)	266, 369
TscAI	CASTG	2 cut(s)	81, 93
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	204, 285
TspRI	CASTG	2 cut(s)	81, 93
VneI	GTGCAC	1 cut(s)	6
XapI	RAATTY	2 cut(s)	82, 191
XmiI	GTMKAC	1 cut(s)	359
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.