RchiOBHm_Chr3g0480141

Adagio protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0021377
Physical Location & Seq
Forward (+)
25917297 .. 25920193
2897 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44517

Sequence Viewer

Length: 612 bp
ATGTTGTTTGACATTAGGCAACTATTTCAAGAGAGATATGCGAACTCTCTGGCTTATTGTGTGGATCAAAAGTTTTTCATTTGCTCTACTGCATCACAACCTCAGCTTTGGGAAGGCACAAGGTTGGGACATTCCCTTTCAGTTTATGGCCGGTCAAAGATTCTCATGTTTGGTGGACTTGCCAACAGTGGGCACTTGCGGTTAAGATCAGGTGAGACTTATACCATTGATTTGGAAGATGAAGAGCCTCAATGGAGGCAACTGGAGTGTAATGCATTTACCAGCATTGACAGCCAGAGTGCAGTGCTCCCTCCTCCTAGACTTGATCATGTTGCTGTGAGCATGCCTTGTGGAAGGATTATCATTTTTGGTGGTTCAATTGCCGGGCTGCATTCTCCTTCTCAGCTTTTCCTCTTGGATCCTTCTGAAGAGAAACCATCATGGAGAATTTTGAACGTTCCCGGGCAACCACCTAAATTTGCTTGGGGTCACAGCACCTGCGTGGTCGGAGGGACAAGGGTCCTGGTACTGGGTGGCCACACAGGTGAGGAGTGGATACTTAATGACTTGCATGAGTTGTGCTTAGCAAGCAGGCAGGATTCAGACCTATGA

Protein Analysis

203

Amino Acids

22.6

Weight (kDa)

5.6

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_HCF PF13854 40 - 180 4.1e-07 Host cell factor, Kelch-repeats domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 43 - 199 2.5e-18 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 89 - 198 7.9e-07 Attractin/LZTR1 beta-propeller
Beta-prop_FBX42 PF13415 91 - 198 4.4e-13 FBX42, beta-propeller domain
Kelch_2 PF07646 108 - 155 3.1e-08 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021377)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0480141
rosa_multiflora Rmu_sc0001549.1_g000001
rosa_samantha Rh3AG232200 Rh3CG262000
rosa_wichuraiana Rw3G020850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 506
Acc36I ACCTGC 1 cut(s) 506
AciI CCGC 1 cut(s) 199
AclI AACGTT 1 cut(s) 456
AclWI GGATC 3 cut(s) 72, 413, 426
AcoI YGGCCR 2 cut(s) 148, 535
AcsI RAATTY 2 cut(s) 447, 476
AcuI CTGAAG 1 cut(s) 447
AfaI GTAC 1 cut(s) 528
AfiI CCNNNNNNNGG 2 cut(s) 189, 529
AgsI TTSAA 3 cut(s) 29, 378, 454
AjnI CCWGG 1 cut(s) 522
AleI CACNNNNGTG 2 cut(s) 500, 543
AluBI AGCT 2 cut(s) 106, 406
AluI AGCT 2 cut(s) 106, 406
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 3 cut(s) 72, 413, 426
AlwNI CAGNNNCTG 1 cut(s) 498
Ama87I CYCGRG 1 cut(s) 461
AoxI GGCC 2 cut(s) 148, 535
ApeKI GCWGC 1 cut(s) 388
ApoI RAATTY 2 cut(s) 447, 476
AspS9I GGNCC 1 cut(s) 520
AsuC2I CCSGG 3 cut(s) 385, 462, 463
AsuHPI GGTGA 2 cut(s) 224, 557
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 1 cut(s) 520
BaeGI GKGCMC 1 cut(s) 195
BalI TGGCCA 1 cut(s) 537
BamHI GGATCC 1 cut(s) 418
Bbv12I GWGCWC 1 cut(s) 309
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 375
BccI CCATC 1 cut(s) 445
BciT130I CCWGG 1 cut(s) 524
BciVI GTATCC 1 cut(s) 549
BclI TGATCA 1 cut(s) 325
BcnI CCSGG 3 cut(s) 385, 462, 463
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 1 cut(s) 318
BfuAI ACCTGC 1 cut(s) 506
BfuI GTATCC 1 cut(s) 549
BisI GCNGC 1 cut(s) 389
BlpI GCTNAGC 1 cut(s) 583
BlsI GCNGC 1 cut(s) 390
Bme1390I CCNGG 4 cut(s) 385, 462, 463, 524
Bme18I GGWCC 1 cut(s) 520
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 1 cut(s) 520
BmiI GGNNCC 2 cut(s) 420, 521
BmrFI CCNGG 4 cut(s) 385, 462, 463, 524
BmrI ACTGGG 1 cut(s) 539
BmsI GCATC 1 cut(s) 101
BmuI ACTGGG 1 cut(s) 539
BoxI GACNNNNGTC 1 cut(s) 518
BpmI CTGGAG 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 583
BpuMI CCSGG 3 cut(s) 385, 462, 463
BsaJI CCNNGG 1 cut(s) 461
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 529
Bse118I RCCGGY 1 cut(s) 150
Bse1I ACTGG 2 cut(s) 267, 534
BseBI CCWGG 1 cut(s) 524
BseDI CCNNGG 1 cut(s) 461
BseLI CCNNNNNNNGG 2 cut(s) 189, 529
BseMII CTCAG 2 cut(s) 116, 416
BseNI ACTGG 2 cut(s) 267, 534
BseRI GAGGAG 2 cut(s) 303, 563
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 1 cut(s) 375
BsgI GTGCAG 1 cut(s) 321
BshFI GGCC 2 cut(s) 150, 537
BsiHKAI GWGCWC 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 3 cut(s) 151, 384, 462
BslFI GGGAC 2 cut(s) 141, 526
BslI CCNNNNNNNGG 2 cut(s) 189, 529
BsmAI GTCTC 1 cut(s) 209
BsmFI GGGAC 2 cut(s) 141, 526
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 2 cut(s) 150, 537
BsoBI CYCGRG 1 cut(s) 461
Bsp1286I GDGCHC 2 cut(s) 195, 309
Bsp143I GATC 4 cut(s) 64, 206, 325, 418
Bsp1720I GCTNAGC 1 cut(s) 583
BspACI CCGC 1 cut(s) 199
BspANI GGCC 2 cut(s) 150, 537
BspCNI CTCAG 2 cut(s) 115, 415
BspLI GGNNCC 2 cut(s) 420, 521
BspMI ACCTGC 1 cut(s) 506
BspPI GGATC 3 cut(s) 72, 413, 426
BspQI GCTCTTC 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 150
BsrI ACTGG 2 cut(s) 267, 534
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 461
BssMI GATC 4 cut(s) 64, 206, 325, 418
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 1 cut(s) 188
Bst6I CTCTTC 2 cut(s) 237, 423
BstC8I GCNNGC 3 cut(s) 344, 589, 593
BstDEI CTNAG 3 cut(s) 102, 402, 583
BstKTI GATC 4 cut(s) 67, 209, 328, 421
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 4 cut(s) 64, 206, 325, 418
BstMWI GCNNNNNNNGC 2 cut(s) 291, 588
BstNI CCWGG 1 cut(s) 524
BstNSI RCATGY 1 cut(s) 346
BstPAI GACNNNNGTC 1 cut(s) 518
BstSCI CCNGG 4 cut(s) 383, 460, 461, 522
BstSLI GKGCMC 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 418
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 418
BsuI GTATCC 1 cut(s) 549
BsuRI GGCC 2 cut(s) 150, 537
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 193, 309
BveI ACCTGC 1 cut(s) 506
Cac8I GCNNGC 3 cut(s) 344, 589, 593
CaiI CAGNNNCTG 1 cut(s) 498
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 520
Cfr9I CCCGGG 1 cut(s) 461
Csp6I GTAC 1 cut(s) 527
CviAII CATG 5 cut(s) 166, 329, 343, 441, 572
CviJI RGCY 8 cut(s) 53, 106, 150, 247, 294, 388, 406, 537
CviKI_1 RGCY 8 cut(s) 53, 106, 150, 247, 294, 388, 406, 537
CviQI GTAC 1 cut(s) 527
DdeI CTNAG 3 cut(s) 102, 402, 583
DpnI GATC 4 cut(s) 66, 208, 327, 420
DpnII GATC 4 cut(s) 64, 206, 325, 418
EaeI YGGCCR 2 cut(s) 148, 535
Eam1104I CTCTTC 2 cut(s) 237, 423
EarI CTCTTC 2 cut(s) 237, 423
Eco47I GGWCC 1 cut(s) 520
Eco57I CTGAAG 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 520
EcoRII CCWGG 1 cut(s) 522
EcoT22I ATGCAT 1 cut(s) 277
FaeI CATG 5 cut(s) 169, 332, 346, 444, 575
FaiI YATR 9 cut(s) 39, 147, 167, 222, 330, 344, 442, 573, 610
FaqI GGGAC 2 cut(s) 141, 526
FatI CATG 5 cut(s) 165, 328, 342, 440, 571
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 1 cut(s) 389
Fsp4HI GCNGC 1 cut(s) 389
FspBI CTAG 1 cut(s) 318
GluI GCNGC 1 cut(s) 389
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 2 cut(s) 150, 537
HapII CCGG 3 cut(s) 151, 384, 462
Hin1II CATG 5 cut(s) 169, 332, 346, 444, 575
HinfI GANTC 2 cut(s) 160, 599
HpaII CCGG 3 cut(s) 151, 384, 462
HphI GGTGA 2 cut(s) 224, 557
Hpy166II GTNNAC 1 cut(s) 176
Hpy188I TCNGA 3 cut(s) 427, 509, 604
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 176
HpyAV CCTTC 4 cut(s) 107, 348, 408, 432
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 5 cut(s) 92, 275, 302, 391, 571
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 588
HpyF3I CTNAG 3 cut(s) 102, 402, 583
HpySE526I ACGT 1 cut(s) 456
Hsp92II CATG 5 cut(s) 169, 332, 346, 444, 575
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 4 cut(s) 64, 206, 325, 418
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 312
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 1 cut(s) 101
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 1 cut(s) 488
MalI GATC 4 cut(s) 66, 208, 327, 420
MboI GATC 4 cut(s) 64, 206, 325, 418
MboII GAAGA 3 cut(s) 248, 254, 440
MfeI CAATTG 1 cut(s) 378
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 2 cut(s) 195, 309
MlsI TGGCCA 1 cut(s) 537
MluCI AATT 3 cut(s) 378, 447, 476
MluNI TGGCCA 1 cut(s) 537
MmeI TCCRAC 1 cut(s) 487
MnlI CCTC 8 cut(s) 111, 249, 258, 321, 324, 422, 503, 541
Mox20I TGGCCA 1 cut(s) 537
Mph1103I ATGCAT 1 cut(s) 277
MscI TGGCCA 1 cut(s) 537
MseI TTAA 2 cut(s) 203, 561
MslI CAYNNNNRTG 2 cut(s) 500, 543
Msp20I TGGCCA 1 cut(s) 537
MspI CCGG 3 cut(s) 151, 384, 462
MspR9I CCNGG 4 cut(s) 385, 462, 463, 524
MunI CAATTG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 1 cut(s) 524
MwoI GCNNNNNNNGC 2 cut(s) 291, 588
NciI CCSGG 3 cut(s) 385, 462, 463
NdeII GATC 4 cut(s) 64, 206, 325, 418
NlaIII CATG 5 cut(s) 169, 332, 346, 444, 575
NlaIV GGNNCC 2 cut(s) 420, 521
NmuCI GTSAC 1 cut(s) 488
NsiI ATGCAT 1 cut(s) 277
NspI RCATGY 1 cut(s) 346
OliI CACNNNNGTG 2 cut(s) 500, 543
PaeI GCATGC 1 cut(s) 346
PaqCI CACCTGC 1 cut(s) 506
PciSI GCTCTTC 1 cut(s) 237
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 2 cut(s) 160, 599
PkrI GCNGC 1 cut(s) 390
PpuMI RGGWCCY 1 cut(s) 520
PshAI GACNNNNGTC 1 cut(s) 518
Psp1406I AACGTT 1 cut(s) 456
Psp5II RGGWCCY 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 522
PspGI CCWGG 1 cut(s) 522
PspN4I GGNNCC 2 cut(s) 420, 521
PspPI GGNCC 1 cut(s) 520
PspPPI RGGWCCY 1 cut(s) 520
PstNI CAGNNNCTG 1 cut(s) 498
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 1 cut(s) 528
RsaNI GTAC 1 cut(s) 527
RseI CAYNNNNRTG 2 cut(s) 500, 543
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 2 cut(s) 203, 561
SatI GCNGC 1 cut(s) 389
Sau3AI GATC 4 cut(s) 64, 206, 325, 418
Sau96I GGNCC 1 cut(s) 520
ScrFI CCNGG 4 cut(s) 385, 462, 463, 524
SduI GDGCHC 2 cut(s) 195, 309
SfaNI GCATC 1 cut(s) 101
SinI GGWCC 1 cut(s) 520
SmaI CCCGGG 1 cut(s) 463
SmiMI CAYNNNNRTG 2 cut(s) 500, 543
SphI GCATGC 1 cut(s) 346
Sse9I AATT 3 cut(s) 378, 447, 476
SsiI CCGC 1 cut(s) 199
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 4 cut(s) 383, 460, 461, 522
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 1 cut(s) 459
TasI AATT 3 cut(s) 378, 447, 476
TfiI GAWTC 2 cut(s) 160, 599
Tru1I TTAA 2 cut(s) 203, 561
Tru9I TTAA 2 cut(s) 203, 561
TscAI CASTG 2 cut(s) 193, 309
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 1 cut(s) 388
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 2 cut(s) 67, 255
TspMI CCCGGG 1 cut(s) 461
TspRI CASTG 2 cut(s) 193, 309
VpaK11BI GGWCC 1 cut(s) 520
XapI RAATTY 2 cut(s) 447, 476
XceI RCATGY 1 cut(s) 346
XmaI CCCGGG 1 cut(s) 461
XspI CTAG 1 cut(s) 318
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.