Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001549.1

Orthogroup ID

OG0021377

Physical Location & Seq

Genomic Coordinates Forward (+)

2987 .. 3550

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001549.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgtcatcagagataccggttgacaaatttttagctttcttagtcaccaacttcatggtctcctccctctctaggttgggacattccctttcagtttatggccggtcaaagattctcatgtttggtggacttgccaacagtgggcacttgcggttaagatcaggtgagacttataccattgatttggaagatgaagagcctcaatggaggcaactggagtgtaatgcatttaccagcattgacagccagagtgcagtgctccctcctcctagacttgatcatgttgctgtgagcatgccttgtggaaggattatcatttttggtggttcaattgccgggctgcattctccttctcagcttttcctcttggatccttctgaagagaaaccatcatggagaattttgaacgttcccgggcaaccacctaaatttgcttggggtcacagcacctgcgtggtcggagggacaagggtcctggtactgggtggccacacaggtgaggagtggatactcaatgacttgcatgagttgtgcttagcaagcaggcaggattcagacctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

F-box Kelch_2 Kelch_4 PAS_9

Protein Analysis

187

Amino Acids

20.51

Weight (kDa)

5.58

Isoelectric Point (pI)

57.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021377)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0480141
rosa_multiflora	Rmu_sc0001549.1_g000001
rosa_samantha	Rh3AG232200 Rh3CG262000
rosa_wichuraiana	Rw3G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	458
Acc36I	ACCTGC	1 cut(s)	458
AciI	CCGC	1 cut(s)	151
AclI	AACGTT	1 cut(s)	408
AclWI	GGATC	2 cut(s)	365, 378
AcoI	YGGCCR	2 cut(s)	100, 487
AcsI	RAATTY	3 cut(s)	26, 399, 428
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	1 cut(s)	480
AfiI	CCNNNNNNNGG	3 cut(s)	72, 141, 481
AgeI	ACCGGT	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	330, 406
AjnI	CCWGG	1 cut(s)	474
AleI	CACNNNNGTG	2 cut(s)	452, 495
AluBI	AGCT	2 cut(s)	35, 358
AluI	AGCT	2 cut(s)	35, 358
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	2 cut(s)	64, 161
AlwI	GGATC	2 cut(s)	365, 378
AlwNI	CAGNNNCTG	1 cut(s)	450
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	2 cut(s)	100, 487
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	3 cut(s)	26, 399, 428
AsiGI	ACCGGT	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	472
AsuC2I	CCSGG	3 cut(s)	337, 414, 415
AsuHPI	GGTGA	3 cut(s)	37, 176, 509
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	472
BaeGI	GKGCMC	1 cut(s)	147
BalI	TGGCCA	1 cut(s)	489
BamHI	GGATCC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	476
BciVI	GTATCC	1 cut(s)	501
BclI	TGATCA	1 cut(s)	277
BcnI	CCSGG	3 cut(s)	337, 414, 415
BcoDI	GTCTC	2 cut(s)	64, 161
BfaI	CTAG	2 cut(s)	72, 270
BfuAI	ACCTGC	1 cut(s)	458
BfuI	GTATCC	1 cut(s)	501
BisI	GCNGC	1 cut(s)	341
BlpI	GCTNAGC	1 cut(s)	535
BlsI	GCNGC	1 cut(s)	342
Bme1390I	CCNGG	4 cut(s)	337, 414, 415, 476
Bme18I	GGWCC	1 cut(s)	472
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	472
BmiI	GGNNCC	2 cut(s)	372, 473
BmrFI	CCNGG	4 cut(s)	337, 414, 415, 476
BmrI	ACTGGG	1 cut(s)	491
BmuI	ACTGGG	1 cut(s)	491
BoxI	GACNNNNGTC	1 cut(s)	470
BpmI	CTGGAG	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	535
BpuMI	CCSGG	3 cut(s)	337, 414, 415
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	413
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 141, 481
Bse118I	RCCGGY	2 cut(s)	16, 102
Bse1I	ACTGG	2 cut(s)	219, 486
BseBI	CCWGG	1 cut(s)	476
BseDI	CCNNGG	1 cut(s)	413
BseLI	CCNNNNNNNGG	3 cut(s)	72, 141, 481
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	2 cut(s)	219, 486
BseRI	GAGGAG	3 cut(s)	52, 255, 515
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	327
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	102, 489
BshTI	ACCGGT	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	4 cut(s)	17, 103, 336, 414
BslFI	GGGAC	2 cut(s)	93, 478
BslI	CCNNNNNNNGG	3 cut(s)	72, 141, 481
BsmAI	GTCTC	2 cut(s)	64, 161
BsmFI	GGGAC	2 cut(s)	93, 478
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	102, 489
Bso31I	GGTCTC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	2 cut(s)	147, 261
Bsp143I	GATC	3 cut(s)	158, 277, 370
Bsp1720I	GCTNAGC	1 cut(s)	535
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	2 cut(s)	102, 489
BspCNI	CTCAG	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	372, 473
BspMI	ACCTGC	1 cut(s)	458
BspPI	GGATC	2 cut(s)	365, 378
BspQI	GCTCTTC	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	64
BsrFI	RCCGGY	2 cut(s)	16, 102
BsrI	ACTGG	2 cut(s)	219, 486
BssAI	RCCGGY	2 cut(s)	16, 102
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	3 cut(s)	158, 277, 370
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	2 cut(s)	189, 375
BstC8I	GCNNGC	3 cut(s)	296, 541, 545
BstDEI	CTNAG	3 cut(s)	40, 354, 535
BstKTI	GATC	3 cut(s)	161, 280, 373
BstMAI	GTCTC	2 cut(s)	64, 161
BstMBI	GATC	3 cut(s)	158, 277, 370
BstMWI	GCNNNNNNNGC	2 cut(s)	243, 540
BstNI	CCWGG	1 cut(s)	476
BstNSI	RCATGY	1 cut(s)	298
BstPAI	GACNNNNGTC	1 cut(s)	470
BstSCI	CCNGG	4 cut(s)	335, 412, 413, 474
BstSLI	GKGCMC	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	327
BstX2I	RGATCY	1 cut(s)	370
BstXI	CCANNNNNNTGG	2 cut(s)	55, 184
BstYI	RGATCY	1 cut(s)	370
BsuI	GTATCC	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	102, 489
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	145, 261
BveI	ACCTGC	1 cut(s)	458
Cac8I	GCNNGC	3 cut(s)	296, 541, 545
CaiI	CAGNNNCTG	1 cut(s)	450
Cfr10I	RCCGGY	2 cut(s)	16, 102
Cfr13I	GGNCC	1 cut(s)	472
Cfr9I	CCCGGG	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	479
CspAI	ACCGGT	1 cut(s)	16
CviAII	CATG	6 cut(s)	55, 118, 281, 295, 393, 524
CviJI	RGCY	7 cut(s)	35, 102, 199, 246, 340, 358, 489
CviKI_1	RGCY	7 cut(s)	35, 102, 199, 246, 340, 358, 489
CviQI	GTAC	1 cut(s)	479
DdeI	CTNAG	3 cut(s)	40, 354, 535
DpnI	GATC	3 cut(s)	160, 279, 372
DpnII	GATC	3 cut(s)	158, 277, 370
EaeI	YGGCCR	2 cut(s)	100, 487
Eam1104I	CTCTTC	2 cut(s)	189, 375
EarI	CTCTTC	2 cut(s)	189, 375
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	474
EcoT22I	ATGCAT	1 cut(s)	229
FaeI	CATG	6 cut(s)	58, 121, 284, 298, 396, 527
FaiI	YATR	9 cut(s)	56, 99, 119, 174, 282, 296, 394, 525, 562
FaqI	GGGAC	2 cut(s)	93, 478
FatI	CATG	6 cut(s)	54, 117, 280, 294, 392, 523
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	2 cut(s)	72, 270
GluI	GCNGC	1 cut(s)	341
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	2 cut(s)	102, 489
HapII	CCGG	4 cut(s)	17, 103, 336, 414
Hin1II	CATG	6 cut(s)	58, 121, 284, 298, 396, 527
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	112, 551
HpaII	CCGG	4 cut(s)	17, 103, 336, 414
HphI	GGTGA	3 cut(s)	37, 176, 509
Hpy166II	GTNNAC	2 cut(s)	22, 128
Hpy188I	TCNGA	4 cut(s)	10, 379, 461, 556
Hpy8I	GTNNAC	2 cut(s)	22, 128
HpyAV	CCTTC	3 cut(s)	300, 360, 384
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	4 cut(s)	227, 254, 343, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	243, 540
HpyF3I	CTNAG	3 cut(s)	40, 354, 535
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	6 cut(s)	58, 121, 284, 298, 396, 527
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	158, 277, 370
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	264
Lsp1109I	GCAGC	1 cut(s)	327
MaeI	CTAG	2 cut(s)	72, 270
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	2 cut(s)	43, 440
MalI	GATC	3 cut(s)	160, 279, 372
MboI	GATC	3 cut(s)	158, 277, 370
MboII	GAAGA	3 cut(s)	200, 206, 392
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	2 cut(s)	147, 261
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	4 cut(s)	26, 330, 399, 428
MluNI	TGGCCA	1 cut(s)	489
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	9 cut(s)	73, 77, 201, 210, 273, 276, 374, 455, 493
Mox20I	TGGCCA	1 cut(s)	489
Mph1103I	ATGCAT	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	489
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	2 cut(s)	452, 495
Msp20I	TGGCCA	1 cut(s)	489
MspI	CCGG	4 cut(s)	17, 103, 336, 414
MspR9I	CCNGG	4 cut(s)	337, 414, 415, 476
MunI	CAATTG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	2 cut(s)	243, 540
NciI	CCSGG	3 cut(s)	337, 414, 415
NdeII	GATC	3 cut(s)	158, 277, 370
NlaIII	CATG	6 cut(s)	58, 121, 284, 298, 396, 527
NlaIV	GGNNCC	2 cut(s)	372, 473
NmuCI	GTSAC	2 cut(s)	43, 440
NsiI	ATGCAT	1 cut(s)	229
NspI	RCATGY	1 cut(s)	298
OliI	CACNNNNGTG	2 cut(s)	452, 495
PaeI	GCATGC	1 cut(s)	298
PaqCI	CACCTGC	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	189
PctI	GAATGC	1 cut(s)	343
PfeI	GAWTC	2 cut(s)	112, 551
PinAI	ACCGGT	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	342
PpuMI	RGGWCCY	1 cut(s)	472
PshAI	GACNNNNGTC	1 cut(s)	470
Psp1406I	AACGTT	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	474
PspGI	CCWGG	1 cut(s)	474
PspN4I	GGNNCC	2 cut(s)	372, 473
PspPI	GGNCC	1 cut(s)	472
PspPPI	RGGWCCY	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	450
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
RseI	CAYNNNNRTG	2 cut(s)	452, 495
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	3 cut(s)	158, 277, 370
Sau96I	GGNCC	1 cut(s)	472
ScrFI	CCNGG	4 cut(s)	337, 414, 415, 476
SduI	GDGCHC	2 cut(s)	147, 261
SetI	ASST	9 cut(s)	37, 77, 166, 360, 411, 427, 452, 499, 561
SinI	GGWCC	1 cut(s)	472
SmaI	CCCGGG	1 cut(s)	415
SmiMI	CAYNNNNRTG	2 cut(s)	452, 495
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	4 cut(s)	26, 330, 399, 428
SsiI	CCGC	1 cut(s)	151
SspMI	CTAG	2 cut(s)	72, 270
StyD4I	CCNGG	4 cut(s)	335, 412, 413, 474
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	1 cut(s)	411
TasI	AATT	4 cut(s)	26, 330, 399, 428
TfiI	GAWTC	2 cut(s)	112, 551
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	2 cut(s)	145, 261
TseFI	GTSAC	2 cut(s)	43, 440
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	2 cut(s)	43, 440
TspDTI	ATGAA	2 cut(s)	43, 207
TspMI	CCCGGG	1 cut(s)	413
TspRI	CASTG	2 cut(s)	145, 261
VpaK11BI	GGWCC	1 cut(s)	472
XapI	RAATTY	3 cut(s)	26, 399, 428
XceI	RCATGY	1 cut(s)	298
XmaI	CCCGGG	1 cut(s)	413
XspI	CTAG	2 cut(s)	72, 270
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.