Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0021377

Physical Location & Seq

Genomic Coordinates Forward (+)

25600335 .. 25603113

Gene Structure 2779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG262000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTTTGAAAACCAAGTGCTTTCTCTTCCATCGCCTATAGATGAGGTCTGTGATTTTAATCTTCGACATTACAAAAGCAATACAGCAGATGGTTATGCAGAAGTAGTTGCAGACACAGAGAATAGCTTGGTCGGAATTGTCCCTCCAACTGTCCGCTTCATGTTGGGACATTCCCTTTCAGTTTATGGCCGGTCAAAGATTCTCATGTTTGGTGGACTTGCCAACAGTGGGCACTTGCGGTTAAGATCAGGTGAGACTTATACCATTGATTTGGAAGATGAAGAGCCTCAATGGAGGCAACTGGAGTGTAATGCATTTACCAGCATTGACAGCCAGAGTGCAGTGCTCCCTCCTCCTAGACTTGATCATGTTGCTGTGAGCATGCCTTGTGGAAGGATTATCATTTTTGGTGGTTCAATTGCCGGGCTGCATTCTCCTTCTCAGCTTTTCCTCTTGGATCCTTCTGAAGAGAAACCATCATGGAGAATTTTGAACGTTCCCGGGCAACCACCTAAATTTGCTTGGGGTCACAGCACCTGCGTGGTCGGAGGGACAAGGGTCCTGGTACTGGGTGGCCACACAGGTGAGGAGTGGATACTCAATGACTTGCATGAGTTGTGCTTAGCAAGCAGGCAGGATTCAGACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

F-box Kelch_2 Kelch_4 PAS_9

Protein Analysis

216

Amino Acids

23.72

Weight (kDa)

5.06

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_HCF	PF13854	54 - 193	2.2e-06	Host cell factor, Kelch-repeats domain
Kelch_KLHDC2_KLHL20_DRC7	PF24681	56 - 212	3.1e-18	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42	PF13415	57 - 211	3.6e-15	FBX42, beta-propeller domain
Beta-prop_ATRN-LZTR1	PF24981	102 - 211	8.9e-07	Attractin/LZTR1 beta-propeller
Kelch_2	PF07646	121 - 168	3.4e-08	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021377)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0480141
rosa_multiflora	Rmu_sc0001549.1_g000001
rosa_samantha	Rh3AG232200 Rh3CG262000
rosa_wichuraiana	Rw3G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	545
Acc36I	ACCTGC	1 cut(s)	545
AciI	CCGC	2 cut(s)	154, 238
AclI	AACGTT	1 cut(s)	495
AclWI	GGATC	2 cut(s)	452, 465
AcoI	YGGCCR	2 cut(s)	187, 574
AcsI	RAATTY	2 cut(s)	486, 515
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	2 cut(s)	228, 568
AgsI	TTSAA	3 cut(s)	8, 417, 493
AjnI	CCWGG	1 cut(s)	561
AleI	CACNNNNGTG	2 cut(s)	539, 582
AluBI	AGCT	2 cut(s)	126, 445
AluI	AGCT	2 cut(s)	126, 445
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	2 cut(s)	452, 465
AlwNI	CAGNNNCTG	1 cut(s)	537
Ama87I	CYCGRG	1 cut(s)	500
AoxI	GGCC	2 cut(s)	187, 574
ApeKI	GCWGC	1 cut(s)	427
ApoI	RAATTY	2 cut(s)	486, 515
AspS9I	GGNCC	1 cut(s)	559
AsuC2I	CCSGG	3 cut(s)	424, 501, 502
AsuHPI	GGTGA	2 cut(s)	263, 596
AvaI	CYCGRG	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	559
BaeGI	GKGCMC	1 cut(s)	234
BalI	TGGCCA	1 cut(s)	576
BamHI	GGATCC	1 cut(s)	457
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	3 cut(s)	37, 83, 484
BciT130I	CCWGG	1 cut(s)	563
BciVI	GTATCC	1 cut(s)	588
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	3 cut(s)	424, 501, 502
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	545
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	1 cut(s)	428
BlpI	GCTNAGC	1 cut(s)	622
BlsI	GCNGC	1 cut(s)	429
Bme1390I	CCNGG	4 cut(s)	424, 501, 502, 563
Bme18I	GGWCC	1 cut(s)	559
BmeT110I	CYCGRG	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	559
BmiI	GGNNCC	2 cut(s)	459, 560
BmrFI	CCNGG	4 cut(s)	424, 501, 502, 563
BmrI	ACTGGG	1 cut(s)	578
BmuI	ACTGGG	1 cut(s)	578
BoxI	GACNNNNGTC	1 cut(s)	557
BpmI	CTGGAG	1 cut(s)	323
Bpu1102I	GCTNAGC	1 cut(s)	622
BpuMI	CCSGG	3 cut(s)	424, 501, 502
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 568
Bse118I	RCCGGY	1 cut(s)	189
Bse1I	ACTGG	2 cut(s)	306, 573
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	563
BseDI	CCNNGG	1 cut(s)	500
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	228, 568
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	2 cut(s)	306, 573
BseRI	GAGGAG	2 cut(s)	342, 602
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	414
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	2 cut(s)	189, 576
BsiHKAI	GWGCWC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	3 cut(s)	190, 423, 501
BslFI	GGGAC	3 cut(s)	125, 180, 565
BslI	CCNNNNNNNGG	2 cut(s)	228, 568
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	3 cut(s)	125, 180, 565
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	2 cut(s)	189, 576
BsoBI	CYCGRG	1 cut(s)	500
Bsp1286I	GDGCHC	2 cut(s)	234, 348
Bsp143I	GATC	3 cut(s)	245, 364, 457
Bsp1720I	GCTNAGC	1 cut(s)	622
BspACI	CCGC	2 cut(s)	154, 238
BspANI	GGCC	2 cut(s)	189, 576
BspCNI	CTCAG	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	459, 560
BspMI	ACCTGC	1 cut(s)	545
BspPI	GGATC	2 cut(s)	452, 465
BspQI	GCTCTTC	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	306, 573
BssAI	RCCGGY	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	500
BssMI	GATC	3 cut(s)	245, 364, 457
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	2 cut(s)	151, 227
Bst6I	CTCTTC	3 cut(s)	30, 276, 462
BstC8I	GCNNGC	3 cut(s)	383, 628, 632
BstDEI	CTNAG	2 cut(s)	441, 622
BstKTI	GATC	3 cut(s)	248, 367, 460
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	3 cut(s)	245, 364, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 627
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	1 cut(s)	385
BstPAI	GACNNNNGTC	1 cut(s)	557
BstSCI	CCNGG	4 cut(s)	422, 499, 500, 561
BstSFI	CTRYAG	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	457
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	457
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	2 cut(s)	189, 576
BtgZI	GCGATG	1 cut(s)	15
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	232, 348
BveI	ACCTGC	1 cut(s)	545
Cac8I	GCNNGC	3 cut(s)	383, 628, 632
CaiI	CAGNNNCTG	1 cut(s)	537
Cfr10I	RCCGGY	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	559
Cfr9I	CCCGGG	1 cut(s)	500
Csp6I	GTAC	1 cut(s)	566
CviAII	CATG	6 cut(s)	160, 205, 368, 382, 480, 611
CviJI	RGCY	7 cut(s)	126, 189, 286, 333, 427, 445, 576
CviKI_1	RGCY	7 cut(s)	126, 189, 286, 333, 427, 445, 576
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	2 cut(s)	441, 622
DpnI	GATC	3 cut(s)	247, 366, 459
DpnII	GATC	3 cut(s)	245, 364, 457
EaeI	YGGCCR	2 cut(s)	187, 574
Eam1104I	CTCTTC	3 cut(s)	30, 276, 462
EarI	CTCTTC	3 cut(s)	30, 276, 462
Eco47I	GGWCC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	500
EcoO109I	RGGNCCY	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	561
EcoT22I	ATGCAT	1 cut(s)	316
FaeI	CATG	6 cut(s)	163, 208, 371, 385, 483, 614
FaqI	GGGAC	3 cut(s)	125, 180, 565
FatI	CATG	6 cut(s)	159, 204, 367, 381, 479, 610
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	428
Fsp4HI	GCNGC	1 cut(s)	428
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	1 cut(s)	428
GsuI	CTGGAG	1 cut(s)	323
HaeIII	GGCC	2 cut(s)	189, 576
HapII	CCGG	3 cut(s)	190, 423, 501
Hin1II	CATG	6 cut(s)	163, 208, 371, 385, 483, 614
HinfI	GANTC	2 cut(s)	199, 638
HpaII	CCGG	3 cut(s)	190, 423, 501
HphI	GGTGA	2 cut(s)	263, 596
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	4 cut(s)	134, 466, 548, 643
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	387, 447, 471
HpyCH4III	ACNGT	2 cut(s)	151, 227
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	6 cut(s)	98, 110, 314, 341, 430, 610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 627
HpyF3I	CTNAG	2 cut(s)	441, 622
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	6 cut(s)	163, 208, 371, 385, 483, 614
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	3 cut(s)	245, 364, 457
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	351
Lsp1109I	GCAGC	1 cut(s)	414
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	3 cut(s)	247, 366, 459
MboI	GATC	3 cut(s)	245, 364, 457
MboII	GAAGA	5 cut(s)	17, 53, 287, 293, 479
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	2 cut(s)	234, 348
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	4 cut(s)	135, 417, 486, 515
MluNI	TGGCCA	1 cut(s)	576
MmeI	TCCRAC	3 cut(s)	112, 170, 526
MnlI	CCTC	9 cut(s)	37, 153, 288, 297, 360, 363, 461, 542, 580
Mox20I	TGGCCA	1 cut(s)	576
Mph1103I	ATGCAT	1 cut(s)	316
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	2 cut(s)	57, 242
MslI	CAYNNNNRTG	2 cut(s)	539, 582
Msp20I	TGGCCA	1 cut(s)	576
MspI	CCGG	3 cut(s)	190, 423, 501
MspR9I	CCNGG	4 cut(s)	424, 501, 502, 563
MunI	CAATTG	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	2 cut(s)	330, 627
NciI	CCSGG	3 cut(s)	424, 501, 502
NdeII	GATC	3 cut(s)	245, 364, 457
NlaIII	CATG	6 cut(s)	163, 208, 371, 385, 483, 614
NlaIV	GGNNCC	2 cut(s)	459, 560
NmuCI	GTSAC	1 cut(s)	527
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	385
OliI	CACNNNNGTG	2 cut(s)	539, 582
PaeI	GCATGC	1 cut(s)	385
PaqCI	CACCTGC	1 cut(s)	545
PciSI	GCTCTTC	1 cut(s)	276
PctI	GAATGC	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	199, 638
PkrI	GCNGC	1 cut(s)	429
PpuMI	RGGWCCY	1 cut(s)	559
PshAI	GACNNNNGTC	1 cut(s)	557
Psp1406I	AACGTT	1 cut(s)	495
Psp5II	RGGWCCY	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	2 cut(s)	459, 560
PspPI	GGNCC	1 cut(s)	559
PspPPI	RGGWCCY	1 cut(s)	559
PstNI	CAGNNNCTG	1 cut(s)	537
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
RseI	CAYNNNNRTG	2 cut(s)	539, 582
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	57, 242
SatI	GCNGC	1 cut(s)	428
Sau3AI	GATC	3 cut(s)	245, 364, 457
Sau96I	GGNCC	1 cut(s)	559
ScrFI	CCNGG	4 cut(s)	424, 501, 502, 563
SduI	GDGCHC	2 cut(s)	234, 348
SetI	ASST	9 cut(s)	48, 128, 253, 447, 498, 514, 539, 586, 648
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	559
SmaI	CCCGGG	1 cut(s)	502
SmiMI	CAYNNNNRTG	2 cut(s)	539, 582
SphI	GCATGC	1 cut(s)	385
Sse9I	AATT	4 cut(s)	135, 417, 486, 515
SsiI	CCGC	2 cut(s)	154, 238
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	4 cut(s)	422, 499, 500, 561
TaaI	ACNGT	2 cut(s)	151, 227
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	1 cut(s)	64
TasI	AATT	4 cut(s)	135, 417, 486, 515
TfiI	GAWTC	2 cut(s)	199, 638
Tru1I	TTAA	2 cut(s)	57, 242
Tru9I	TTAA	2 cut(s)	57, 242
TscAI	CASTG	2 cut(s)	232, 348
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	527
TspDTI	ATGAA	2 cut(s)	148, 294
TspMI	CCCGGG	1 cut(s)	500
TspRI	CASTG	2 cut(s)	232, 348
VpaK11BI	GGWCC	1 cut(s)	559
XapI	RAATTY	2 cut(s)	486, 515
XceI	RCATGY	1 cut(s)	385
XmaI	CCCGGG	1 cut(s)	500
XspI	CTAG	1 cut(s)	357
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.