RchiOBHm_Chr3g0480501

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0024898
Physical Location & Seq
Reverse (-)
26295781 .. 26297616
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44551

Sequence Viewer

Length: 795 bp
ATGGGGAGTATGAGTATGCAAATAGACAATATGGGTATGCAAATAGGGGATTTGTATACGAATCAAGATACTATTGTAGAGATGATCAGGGATATGCGACAGAATGGCCTAGTGCAAAATCAAGTTAAAGTTGGGTGGTTTGGAGTACCTGAACCGCCATCATTTACAGTGGGATTGGATTTACATTTGGATGATTTGAAGAACAAACTTCTTGAGGACGGGGTGTCAATGGCTCTGGTCACTGGTCATCCAGGCTCTGGGAAAACCACTTTGGCAAAAGCTTTTTCTCAAGATAAGAAAACAAATTCAAGAGCATCATCTTTGTCAACGTTTCAAAAAGACCCAACACCGAGGTTGTACAGGAAATATGTGAAAAAAAAGGGTACCCGAATACTTTCTTTCCAATCCGAAGAAATTGCACTTGACAGGCTGCAACAACTTCTAAATAACACAGGAGAAGATCCTGTGCTTTTGGTCCTGGATAACGTTTGGCTTGGAAACAGGACAGAATCCCTCCTGGCGAGCTTTAAGTTCAAAGAATCGGAAATGTCAAATTACAAGATTTTGGTGACATCAAGATATGTGTTGCCAGGATTTGATGTTGAGTACCACGTGGAAGAACTGAATGACAATGATGCAATGAGTCTTCTCTGTAATTCAGCACGCCTCACAAGATCTTCTTCTAGACTTCTTCTATTCCAGAAGATCTTCAGAGAAAGGCTGTGGAGTGCTGTAAGAGACTTCCACTGGCTATTGAAGTGGTCGGAAGATCACTTTTCGGCAAGGATATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

264

Amino Acids

30.2

Weight (kDa)

7.82

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 62 - 221 1.4e-10 NB-ARC domain
AAA_16 PF13191 64 - 176 1.3e-06 AAA ATPase domain
AAA_22 PF13401 76 - 163 1.9e-07 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024898)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0480501
rosa_roxburghii Rroxscaffold_6G00401300
rosa_samantha Rh3AG235700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 383
AccB1I GGYRCC 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 257
AccI GTMKAC 1 cut(s) 56
AciI CCGC 1 cut(s) 155
AclI AACGTT 2 cut(s) 329, 486
AclWI GGATC 1 cut(s) 455
AcsI RAATTY 1 cut(s) 304
AcuI CTGAAG 1 cut(s) 694
AcvI CACGTG 1 cut(s) 613
AfaI GTAC 4 cut(s) 147, 359, 385, 608
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 5 cut(s) 199, 309, 335, 535, 757
AhdI GACNNNNNGTC 1 cut(s) 223
AjnI CCWGG 4 cut(s) 250, 477, 516, 589
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 2 cut(s) 281, 525
AluI AGCT 2 cut(s) 281, 525
Alw26I GTCTC 1 cut(s) 732
AlwI GGATC 1 cut(s) 455
AlwNI CAGNNNCTG 1 cut(s) 257
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 430
ApoI RAATTY 1 cut(s) 304
Asp700I GAANNNNTTC 2 cut(s) 394, 707
Asp718I GGTACC 1 cut(s) 383
AspS9I GGNCC 1 cut(s) 475
AsuHPI GGTGA 1 cut(s) 580
AvaII GGWCC 1 cut(s) 475
BaeI ACNNNNGTAYC 2 cut(s) 60, 93
BanI GGYRCC 1 cut(s) 383
BbrPI CACGTG 1 cut(s) 613
BbsI GAAGAC 1 cut(s) 638
BbvI GCAGC 1 cut(s) 417
BccI CCATC 1 cut(s) 166
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 4 cut(s) 252, 479, 518, 591
BclI TGATCA 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 732
BfaI CTAG 2 cut(s) 110, 684
BglII AGATCT 2 cut(s) 674, 705
BisI GCNGC 1 cut(s) 431
BlsI GCNGC 1 cut(s) 432
Bme1390I CCNGG 4 cut(s) 252, 479, 518, 591
Bme18I GGWCC 1 cut(s) 475
BmeRI GACNNNNNGTC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 475
BmiI GGNNCC 1 cut(s) 385
BmrFI CCNGG 4 cut(s) 252, 479, 518, 591
BmsI GCATC 2 cut(s) 323, 625
BpiI GAAGAC 1 cut(s) 638
BpuEI CTTGAG 2 cut(s) 233, 273
BsaAI YACGTR 1 cut(s) 613
BsaJI CCNNGG 1 cut(s) 350
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 2 cut(s) 247, 752
Bse3DI GCAATG 1 cut(s) 645
BseBI CCWGG 4 cut(s) 252, 479, 518, 591
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 2 cut(s) 196, 247
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 1 cut(s) 645
BseNI ACTGG 2 cut(s) 247, 752
BseXI GCAGC 1 cut(s) 417
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 383
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 732
BsnI GGCC 1 cut(s) 108
Bsp1407I TGTACA 1 cut(s) 357
Bsp143I GATC 5 cut(s) 84, 460, 674, 705, 769
BspACI CCGC 1 cut(s) 155
BspANI GGCC 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 385
BspPI GGATC 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 645
BsrGI TGTACA 1 cut(s) 357
BsrI ACTGG 2 cut(s) 247, 752
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 5 cut(s) 84, 460, 674, 705, 769
BssNAI GTATAC 1 cut(s) 57
Bst1107I GTATAC 1 cut(s) 57
Bst2UI CCWGG 4 cut(s) 252, 479, 518, 591
Bst4CI ACNGT 1 cut(s) 169
BstAUI TGTACA 1 cut(s) 357
BstBAI YACGTR 1 cut(s) 613
BstC8I GCNNGC 2 cut(s) 523, 664
BstF5I GGATG 2 cut(s) 196, 247
BstKTI GATC 5 cut(s) 87, 463, 677, 708, 772
BstMAI GTCTC 1 cut(s) 732
BstMBI GATC 5 cut(s) 84, 460, 674, 705, 769
BstNI CCWGG 4 cut(s) 252, 479, 518, 591
BstSCI CCNGG 4 cut(s) 250, 477, 516, 589
BstV1I GCAGC 1 cut(s) 417
BstV2I GAAGAC 1 cut(s) 638
BstX2I RGATCY 3 cut(s) 460, 674, 705
BstYI RGATCY 3 cut(s) 460, 674, 705
BstZ17I GTATAC 1 cut(s) 57
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 2 cut(s) 196, 247
BtsIMutI CAGTG 3 cut(s) 174, 240, 745
Cac8I GCNNGC 2 cut(s) 523, 664
CaiI CAGNNNCTG 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 475
Csp6I GTAC 4 cut(s) 146, 358, 384, 607
CviJI RGCY 9 cut(s) 108, 233, 255, 281, 430, 493, 525, 721, 751
CviKI_1 RGCY 9 cut(s) 108, 233, 255, 281, 430, 493, 525, 721, 751
CviQI GTAC 4 cut(s) 146, 358, 384, 607
DpnI GATC 5 cut(s) 86, 462, 676, 707, 771
DpnII GATC 5 cut(s) 84, 460, 674, 705, 769
DriI GACNNNNNGTC 1 cut(s) 223
Eam1105I GACNNNNNGTC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 694
Eco72I CACGTG 1 cut(s) 613
EcoRII CCWGG 4 cut(s) 250, 477, 516, 589
FaiI YATR 8 cut(s) 11, 17, 32, 38, 57, 95, 369, 582
FalI AAGNNNNNCTT 2 cut(s) 664, 696
FbaI TGATCA 1 cut(s) 84
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 431
FokI GGATG 2 cut(s) 203, 234
Fsp4HI GCNGC 1 cut(s) 431
FspBI CTAG 2 cut(s) 110, 684
GluI GCNGC 1 cut(s) 431
HaeIII GGCC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 4 cut(s) 61, 509, 539, 643
HphI GGTGA 1 cut(s) 580
Hpy166II GTNNAC 2 cut(s) 57, 327
Hpy188I TCNGA 4 cut(s) 409, 544, 713, 766
Hpy188III TCNNGA 7 cut(s) 65, 212, 290, 309, 576, 684, 700
Hpy8I GTNNAC 2 cut(s) 57, 327
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 3 cut(s) 329, 486, 612
HpyCH4V TGCA 6 cut(s) 19, 40, 115, 419, 433, 638
HpySE526I ACGT 3 cut(s) 329, 486, 612
KpnI GGTACC 1 cut(s) 387
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 5 cut(s) 84, 460, 674, 705, 769
Lsp1109I GCAGC 1 cut(s) 417
LweI GCATC 2 cut(s) 323, 625
MaeI CTAG 2 cut(s) 110, 684
MaeII ACGT 3 cut(s) 329, 486, 612
MaeIII GTNAC 2 cut(s) 238, 568
MalI GATC 5 cut(s) 86, 462, 676, 707, 771
MboI GATC 5 cut(s) 84, 460, 674, 705, 769
MflI RGATCY 3 cut(s) 460, 674, 705
MluCI AATT 4 cut(s) 304, 414, 553, 655
MlyI GAGTC 1 cut(s) 652
MmeI TCCRAC 1 cut(s) 744
MnlI CCTC 4 cut(s) 208, 345, 524, 677
MroXI GAANNNNTTC 2 cut(s) 394, 707
MseI TTAA 2 cut(s) 126, 528
MslI CAYNNNNRTG 1 cut(s) 189
MspR9I CCNGG 4 cut(s) 252, 479, 518, 591
MvaI CCWGG 4 cut(s) 252, 479, 518, 591
NdeII GATC 5 cut(s) 84, 460, 674, 705, 769
NlaIV GGNNCC 1 cut(s) 385
NmuCI GTSAC 2 cut(s) 238, 568
PdmI GAANNNNTTC 2 cut(s) 394, 707
PfeI GAWTC 3 cut(s) 61, 509, 539
PflMI CCANNNNNTGG 1 cut(s) 257
PfoI TCCNGGA 1 cut(s) 477
PkrI GCNGC 1 cut(s) 432
PleI GAGTC 1 cut(s) 651
PmaCI CACGTG 1 cut(s) 613
PmlI CACGTG 1 cut(s) 613
PpsI GAGTC 1 cut(s) 651
Ppu21I YACGTR 1 cut(s) 613
Psp1406I AACGTT 2 cut(s) 329, 486
Psp6I CCWGG 4 cut(s) 250, 477, 516, 589
PspCI CACGTG 1 cut(s) 613
PspGI CCWGG 4 cut(s) 250, 477, 516, 589
PspN4I GGNNCC 1 cut(s) 385
PspPI GGNCC 1 cut(s) 475
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 3 cut(s) 460, 674, 705
RsaI GTAC 4 cut(s) 147, 359, 385, 608
RsaNI GTAC 4 cut(s) 146, 358, 384, 607
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 2 cut(s) 126, 528
SatI GCNGC 1 cut(s) 431
Sau3AI GATC 5 cut(s) 84, 460, 674, 705, 769
Sau96I GGNCC 1 cut(s) 475
SchI GAGTC 1 cut(s) 652
ScrFI CCNGG 4 cut(s) 252, 479, 518, 591
SetI ASST 7 cut(s) 151, 283, 332, 356, 489, 527, 615
SfaNI GCATC 2 cut(s) 323, 625
SinI GGWCC 1 cut(s) 475
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 212, 288
SmoI CTYRAG 2 cut(s) 212, 288
Sse9I AATT 4 cut(s) 304, 414, 553, 655
SsiI CCGC 1 cut(s) 155
SspMI CTAG 2 cut(s) 110, 684
StyD4I CCNGG 4 cut(s) 250, 477, 516, 589
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 3 cut(s) 332, 489, 615
TasI AATT 4 cut(s) 304, 414, 553, 655
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 3 cut(s) 61, 509, 539
Tru1I TTAA 2 cut(s) 126, 528
Tru9I TTAA 2 cut(s) 126, 528
TscAI CASTG 3 cut(s) 174, 247, 752
TseFI GTSAC 2 cut(s) 238, 568
TseI GCWGC 1 cut(s) 430
Tsp45I GTSAC 2 cut(s) 238, 568
TspRI CASTG 3 cut(s) 174, 247, 752
Van91I CCANNNNNTGG 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 475
XapI RAATTY 1 cut(s) 304
XbaI TCTAGA 1 cut(s) 683
XmiI GTMKAC 1 cut(s) 56
XmnI GAANNNNTTC 2 cut(s) 394, 707
XspI CTAG 2 cut(s) 110, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.