RchiOBHm_Chr3g0482481

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
28554730 .. 28555095
366 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44734

Sequence Viewer

Length: 366 bp
ATGGGTCGAATCCACCATGTCAATGTGGTTCGCTTGGTTGGATTTTGTGCCGATGGATATATACGAGCTCTCATTTATGAATTCTTACCAAATGGTTCATTGCAGAATTTCTTATCATCAGCAGATCGTAAGAACTCTTTCCTTGGTTGGGATAGGTTGCAAGATATTGCTTTAGGTGTAGCCAAGGGAATTGAATATGTTCACCAAGGGTGTGATCAAAGAATCCTCCATTTTGATATCAAACCCCATAATGTTTTGCTAGAGGAGGACTTCACCCCAAAAGTTTCTGATTTTGGTCTAGCCAAGTTATGCTCCAAGGATCAAAGCGCAATATCCATGACTACAGCCAGGGGGACCATGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.5

Weight (kDa)

6.95

Isoelectric Point (pI)

24.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 112 3.1e-20 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 119 4.6e-22 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0024370)

Species Orthologous Gene IDs
malus_domestica MD01G1006900.v1.1 MD02G1249200.v1.1
rosa_chinensis RchiOBHm_Chr3g0482481

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 327
AcsI RAATTY 2 cut(s) 80, 106
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 1 cut(s) 194
AjnI CCWGG 1 cut(s) 347
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw21I GWGCWC 1 cut(s) 70
AlwI GGATC 1 cut(s) 327
ApoI RAATTY 2 cut(s) 80, 106
Asp700I GAANNNNTTC 2 cut(s) 137, 198
AspLEI GCGC 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 354
AsuHPI GGTGA 2 cut(s) 194, 265
AvaII GGWCC 1 cut(s) 354
BanII GRGCYC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 70
BccI CCATC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 349
BclI TGATCA 1 cut(s) 214
BfaI CTAG 2 cut(s) 260, 299
BfmI CTRYAG 1 cut(s) 342
Bme1390I CCNGG 1 cut(s) 349
Bme18I GGWCC 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 349
BsaJI CCNNGG 6 cut(s) 142, 183, 205, 315, 348, 357
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse3DI GCAATG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 349
BseDI CCNNGG 6 cut(s) 142, 183, 205, 315, 348, 357
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 3 cut(s) 124, 214, 319
Bsp19I CCATGG 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 355
BspPI GGATC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 98
BssECI CCNNGG 6 cut(s) 142, 183, 205, 315, 348, 357
BssMI GATC 3 cut(s) 124, 214, 319
BssT1I CCWWGG 5 cut(s) 142, 183, 205, 315, 357
Bst2UI CCWGG 1 cut(s) 349
BstDSI CCRYGG 1 cut(s) 357
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 3 cut(s) 127, 217, 322
BstMBI GATC 3 cut(s) 124, 214, 319
BstNI CCWGG 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 347
BstSFI CTRYAG 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 357
CfoI GCGC 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 354
CviAII CATG 3 cut(s) 17, 337, 358
CviJI RGCY 5 cut(s) 68, 182, 302, 347, 363
CviKI_1 RGCY 5 cut(s) 68, 182, 302, 347, 363
DpnI GATC 3 cut(s) 126, 216, 321
DpnII GATC 3 cut(s) 124, 214, 319
Ecl136II GAGCTC 1 cut(s) 68
Eco130I CCWWGG 5 cut(s) 142, 183, 205, 315, 357
Eco24I GRGCYC 1 cut(s) 70
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 354
Eco53kI GAGCTC 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 347
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 5 cut(s) 142, 183, 205, 315, 357
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 5 cut(s) 142, 183, 205, 315, 357
FaeI CATG 3 cut(s) 20, 340, 361
FaiI YATR 9 cut(s) 18, 60, 62, 78, 198, 249, 310, 338, 359
FatI CATG 3 cut(s) 16, 336, 357
FbaI TGATCA 1 cut(s) 214
FriOI GRGCYC 1 cut(s) 70
FspBI CTAG 2 cut(s) 260, 299
GlaI GCGC 1 cut(s) 328
HhaI GCGC 1 cut(s) 329
Hin1II CATG 3 cut(s) 20, 340, 361
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HinfI GANTC 2 cut(s) 9, 222
HphI GGTGA 2 cut(s) 194, 265
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 289
Hpy8I GTNNAC 1 cut(s) 202
HpyCH4V TGCA 2 cut(s) 103, 160
Hsp92II CATG 3 cut(s) 20, 340, 361
HspAI GCGC 1 cut(s) 327
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 3 cut(s) 124, 214, 319
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 2 cut(s) 334, 361
MaeI CTAG 2 cut(s) 260, 299
MalI GATC 3 cut(s) 126, 216, 321
MboI GATC 3 cut(s) 124, 214, 319
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 3 cut(s) 80, 106, 189
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 3 cut(s) 236, 256, 259
MroXI GAANNNNTTC 2 cut(s) 137, 198
MslI CAYNNNNRTG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 349
MvaI CCWGG 1 cut(s) 349
NcoI CCATGG 1 cut(s) 357
NdeII GATC 3 cut(s) 124, 214, 319
NlaIII CATG 3 cut(s) 20, 340, 361
NlaIV GGNNCC 1 cut(s) 355
PdmI GAANNNNTTC 2 cut(s) 137, 198
PfeI GAWTC 2 cut(s) 9, 222
Psp124BI GAGCTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 347
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 354
RseI CAYNNNNRTG 1 cut(s) 21
SacI GAGCTC 1 cut(s) 70
Sau3AI GATC 3 cut(s) 124, 214, 319
Sau96I GGNCC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 349
SduI GDGCHC 1 cut(s) 70
SetI ASST 3 cut(s) 70, 158, 178
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 3 cut(s) 80, 106, 189
SspMI CTAG 2 cut(s) 260, 299
SstI GAGCTC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 347
StyI CCWWGG 5 cut(s) 142, 183, 205, 315, 357
TaqI TCGA 1 cut(s) 7
TasI AATT 3 cut(s) 80, 106, 189
TfiI GAWTC 2 cut(s) 9, 222
TspDTI ATGAA 2 cut(s) 87, 93
VpaK11BI GGWCC 1 cut(s) 354
XapI RAATTY 2 cut(s) 80, 106
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XmnI GAANNNNTTC 2 cut(s) 137, 198
XspI CTAG 2 cut(s) 260, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.