Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022694

Physical Location & Seq

Genomic Coordinates Forward (+)

35168919 .. 35169658

Gene Structure 740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45227

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGTCGTTGGACTTGGTGGACTCCAAGTATTTGGGGTTCTCATTCTGAGAGGCCTATTAAAGGATCCTATAGTTGCACAAGTTGGCTTTATCAAGTTTATTACAAGCATAAATCCTCTACTTCAGGGCAAATATCCAGTCTCATATACATGTGGTGCACTTTGTCTGCGAATTGCTAATACCACACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

63

Amino Acids

6.72

Weight (kDa)

9.59

Isoelectric Point (pI)

21.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0487851
rosa_roxburghii	Rroxscaffold_177G00434080 Rroxscaffold_7G00204880
rosa_samantha	Rh3CG072900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	59, 72
AcuI	CTGAAG	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	149
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	145
Alw44I	GTGCAC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	59, 72
AoxI	GGCC	1 cut(s)	52
ApaLI	GTGCAC	1 cut(s)	156
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
BaeGI	GKGCMC	1 cut(s)	160
BamHI	GGATCC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	145
BfmI	CTRYAG	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	59, 72
BsrI	ACTGG	1 cut(s)	137
BssMI	GATC	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	47
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	153
BstSFI	CTRYAG	1 cut(s)	69
BstSLI	GKGCMC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	54
CviAII	CATG	1 cut(s)	150
CviJI	RGCY	2 cut(s)	54, 87
CviKI_1	RGCY	2 cut(s)	54, 87
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eco147I	AGGCCT	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	107
EcoNI	CCTNNNNNAGG	1 cut(s)	59
FaeI	CATG	1 cut(s)	153
FaiI	YATR	5 cut(s)	71, 110, 145, 147, 151
FatI	CATG	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	153
HinfI	GANTC	1 cut(s)	21
Hpy166II	GTNNAC	2 cut(s)	20, 158
Hpy188I	TCNGA	1 cut(s)	48
Hpy8I	GTNNAC	2 cut(s)	20, 158
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	77, 158
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	64
LpnPI	CCDG	2 cut(s)	110, 150
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	15
MnlI	CCTC	2 cut(s)	44, 126
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	148
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	153
NlaIV	GGNNCC	1 cut(s)	66
NspI	RCATGY	1 cut(s)	153
PceI	AGGCCT	1 cut(s)	54
PciI	ACATGT	1 cut(s)	149
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PscI	ACATGT	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	66
PsrI	GAACNNNNNNTAC	2 cut(s)	21, 53
PsuI	RGATCY	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	69
SgeI	CNNG	8 cut(s)	26, 38, 92, 106, 117, 137, 149, 162
SmiMI	CAYNNNNRTG	1 cut(s)	148
Sse9I	AATT	1 cut(s)	171
SseBI	AGGCCT	1 cut(s)	54
StuI	AGGCCT	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	189
TasI	AATT	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
VneI	GTGCAC	1 cut(s)	156
XagI	CCTNNNNNAGG	1 cut(s)	59
XceI	RCATGY	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.