Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0022694

Physical Location & Seq

Genomic Coordinates Forward (+)

5542425 .. 5547201

Gene Structure 4777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG072900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGGAGAAGTGAGGGAGGCGACTGGGATGCTCGTAGAGGCTAGTAATGATGAAACAATAAGAAAAACTAGTATTGCTAAGAGATCAATGGTCGTTGGACTTGGTGGACTCGAAGTATTTGGGGTTCTCATTCTGAGAGGCCTATTAAAGGATCCTATAGTTGCACAAGTTGGCTTTATCAAGTTTATTACAAGCATAAATCCTCTACTTCAGGGCAAATATCCAGTCTCATATACATGTGGTGCACTTTGTCTGCGAATTGCTAATACCACACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

9.88

Weight (kDa)

9.14

Isoelectric Point (pI)

21.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0022694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0487851
rosa_roxburghii	Rroxscaffold_177G00434080 Rroxscaffold_7G00204880
rosa_samantha	Rh3CG072900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	146, 159
AcuI	CTGAAG	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	148
AflIII	ACRYGT	1 cut(s)	236
AhlI	ACTAGT	1 cut(s)	68
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	232
Alw44I	GTGCAC	1 cut(s)	243
AlwI	GGATC	2 cut(s)	146, 159
AoxI	GGCC	1 cut(s)	139
ApaLI	GTGCAC	1 cut(s)	243
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
BaeGI	GKGCMC	1 cut(s)	247
BamHI	GGATCC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	247
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BcoDI	GTCTC	1 cut(s)	232
BcuI	ACTAGT	1 cut(s)	68
BfaI	CTAG	2 cut(s)	42, 69
BfmI	CTRYAG	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	153
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	28, 224
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	2 cut(s)	28, 224
BseSI	GKGCMC	1 cut(s)	247
BshFI	GGCC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	83, 151
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	2 cut(s)	146, 159
BsrI	ACTGG	2 cut(s)	28, 224
BssMI	GATC	2 cut(s)	83, 151
Bst4CI	ACNGT	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	78, 134
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	33
BstKTI	GATC	2 cut(s)	86, 154
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	2 cut(s)	83, 151
BstNSI	RCATGY	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	33
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	3 cut(s)	41, 141, 174
CviKI_1	RGCY	3 cut(s)	41, 141, 174
DdeI	CTNAG	2 cut(s)	78, 134
DpnI	GATC	2 cut(s)	85, 153
DpnII	GATC	2 cut(s)	83, 151
Eco147I	AGGCCT	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	146
FaeI	CATG	1 cut(s)	240
FaiI	YATR	5 cut(s)	158, 197, 232, 234, 238
FatI	CATG	1 cut(s)	236
FokI	GGATG	1 cut(s)	40
FspBI	CTAG	2 cut(s)	42, 69
HaeIII	GGCC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	240
HinfI	GANTC	1 cut(s)	108
Hpy166II	GTNNAC	2 cut(s)	107, 245
Hpy188I	TCNGA	1 cut(s)	135
Hpy8I	GTNNAC	2 cut(s)	107, 245
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4V	TGCA	2 cut(s)	164, 245
HpyF3I	CTNAG	2 cut(s)	78, 134
Hsp92II	CATG	1 cut(s)	240
Kzo9I	GATC	2 cut(s)	83, 151
LpnPI	CCDG	3 cut(s)	9, 197, 237
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	2 cut(s)	42, 69
MalI	GATC	2 cut(s)	85, 153
MboI	GATC	2 cut(s)	83, 151
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	5 cut(s)	6, 10, 31, 131, 213
MseI	TTAA	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	235
NdeII	GATC	2 cut(s)	83, 151
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	1 cut(s)	153
NspI	RCATGY	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	141
PciI	ACATGT	1 cut(s)	236
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PscI	ACATGT	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	153
PsrI	GAACNNNNNNTAC	2 cut(s)	108, 140
PsuI	RGATCY	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	235
SaqAI	TTAA	1 cut(s)	146
Sau3AI	GATC	2 cut(s)	83, 151
SchI	GAGTC	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	247
SfaNI	GCATC	1 cut(s)	18
SfcI	CTRYAG	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	235
SpeI	ACTAGT	1 cut(s)	68
Sse9I	AATT	1 cut(s)	258
SseBI	AGGCCT	1 cut(s)	141
SspMI	CTAG	2 cut(s)	42, 69
StuI	AGGCCT	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	258
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	66
VneI	GTGCAC	1 cut(s)	243
XagI	CCTNNNNNAGG	1 cut(s)	146
XceI	RCATGY	1 cut(s)	240
XspI	CTAG	2 cut(s)	42, 69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.