Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000177

Orthogroup ID

OG0022694

Physical Location & Seq

Genomic Coordinates Forward (+)

18594 .. 22306

Gene Structure 3713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_177G00434080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAGAATATGTCCAGAGTTTGTTGGAAGAGCTGATAATTTTTTTAAGGAGAAATGGCAATTCAGAAAAACTAGTATTGCTAAGAGAGCAATGGTCGTTGGACTTGGTGGACTCAAAGTATTTGGGGTTCTCATTCTGAGAGGCCTATTAAAGGATCCTATAGTTGCACAAGTTGGCTTTATCAAGTTTATTACAAGCATAAATCCTCTACTTCAGCAGGGCAAATATCCAGTCTCACATACATGTGGTGCACTTTGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

9.68

Weight (kDa)

10.13

Isoelectric Point (pI)

16.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0487851
rosa_roxburghii	Rroxscaffold_177G00434080 Rroxscaffold_7G00204880
rosa_samantha	Rh3CG072900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	149, 162
AcuI	CTGAAG	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	151
AflIII	ACRYGT	1 cut(s)	242
AhlI	ACTAGT	1 cut(s)	71
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	1 cut(s)	238
Alw44I	GTGCAC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	149, 162
AoxI	GGCC	1 cut(s)	142
ApaLI	GTGCAC	1 cut(s)	249
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
BaeGI	GKGCMC	1 cut(s)	253
BamHI	GGATCC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	238
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	230
BseSI	GKGCMC	1 cut(s)	253
BshFI	GGCC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	253
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	154
BspANI	GGCC	1 cut(s)	144
BspCNI	CTCAG	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	2 cut(s)	149, 162
BspQI	GCTCTTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	230
BssMI	GATC	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	22
BstDEI	CTNAG	2 cut(s)	81, 137
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	246
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	144
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	3 cut(s)	32, 144, 177
CviKI_1	RGCY	3 cut(s)	32, 144, 177
DdeI	CTNAG	2 cut(s)	81, 137
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco147I	AGGCCT	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	149
FaeI	CATG	1 cut(s)	246
FaiI	YATR	5 cut(s)	10, 161, 200, 240, 244
FatI	CATG	1 cut(s)	242
FspBI	CTAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	246
HinfI	GANTC	1 cut(s)	111
Hpy166II	GTNNAC	2 cut(s)	110, 251
Hpy188I	TCNGA	2 cut(s)	65, 138
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	2 cut(s)	110, 251
HpyCH4V	TGCA	2 cut(s)	167, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	81, 137
Hsp92II	CATG	1 cut(s)	246
Kzo9I	GATC	1 cut(s)	154
LguI	GCTCTTC	1 cut(s)	22
LpnPI	CCDG	3 cut(s)	27, 203, 243
MaeI	CTAG	1 cut(s)	72
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	39
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	2 cut(s)	37, 59
MlyI	GAGTC	1 cut(s)	105
MmeI	TCCRAC	2 cut(s)	4, 79
MnlI	CCTC	2 cut(s)	134, 216
MseI	TTAA	2 cut(s)	45, 149
MslI	CAYNNNNRTG	2 cut(s)	241, 243
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	246
NlaIV	GGNNCC	1 cut(s)	156
NspI	RCATGY	1 cut(s)	246
PceI	AGGCCT	1 cut(s)	144
PciI	ACATGT	1 cut(s)	242
PciSI	GCTCTTC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
PscI	ACATGT	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	156
PsrI	GAACNNNNNNTAC	2 cut(s)	111, 143
PsuI	RGATCY	1 cut(s)	154
RseI	CAYNNNNRTG	2 cut(s)	241, 243
SapI	GCTCTTC	1 cut(s)	22
SaqAI	TTAA	2 cut(s)	45, 149
Sau3AI	GATC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	159
SgeI	CNNG	9 cut(s)	26, 84, 116, 182, 196, 207, 230, 242, 255
SmiMI	CAYNNNNRTG	2 cut(s)	241, 243
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	2 cut(s)	37, 59
SseBI	AGGCCT	1 cut(s)	144
SspMI	CTAG	1 cut(s)	72
StuI	AGGCCT	1 cut(s)	144
TasI	AATT	2 cut(s)	37, 59
Tru1I	TTAA	2 cut(s)	45, 149
Tru9I	TTAA	2 cut(s)	45, 149
VneI	GTGCAC	1 cut(s)	249
XagI	CCTNNNNNAGG	1 cut(s)	149
XceI	RCATGY	1 cut(s)	246
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.