RchiOBHm_Chr3g0488641

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
36312747 .. 36313044
298 bp
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UTR
Exon/CDS
Intron
PRQ45297

Sequence Viewer

Length: 171 bp
ATGGTGGAAAGGAAGCCTCAGATTCTTGCTCCTGCAGCAAAAGTAGTTTGTCATTTATTGTTAGCCTTCAATCTAAATGGGTTATGTGATGACAAAAGTCTTTGGATTGTTTTGTTTGGATTATTAGATCTAGTAGCCAAGGTGAAAAGATCTGATCCAGTTGAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.16

Weight (kDa)

7.81

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024915)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0488641
rosa_multiflora Rmu_sc0001140.1_g000007
rosa_roxburghii Rroxscaffold_1G00039440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 2 cut(s) 70, 164
AlwI GGATC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 154
BbvI GCAGC 1 cut(s) 47
BfaI CTAG 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 33
BglII AGATCT 2 cut(s) 127, 149
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BoxI GACNNNNGTC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 164
Bsp143I GATC 3 cut(s) 127, 149, 154
BspCNI CTCAG 1 cut(s) 31
BspMAI CTGCAG 1 cut(s) 37
BspPI GGATC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 3 cut(s) 127, 149, 154
BssT1I CCWWGG 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 18
BstKTI GATC 3 cut(s) 130, 152, 157
BstMBI GATC 3 cut(s) 127, 149, 154
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstPAI GACNNNNGTC 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 47
BstX2I RGATCY 2 cut(s) 127, 149
BstYI RGATCY 2 cut(s) 127, 149
CviJI RGCY 3 cut(s) 16, 65, 137
CviKI_1 RGCY 3 cut(s) 16, 65, 137
DdeI CTNAG 1 cut(s) 18
DpnI GATC 3 cut(s) 129, 151, 156
DpnII GATC 3 cut(s) 127, 149, 154
Eco130I CCWWGG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaiI YATR 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 131
GluI GCNGC 1 cut(s) 36
HinfI GANTC 1 cut(s) 22
HphI GGTGA 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 21, 154
HpyAV CCTTC 2 cut(s) 76, 158
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 18
Kzo9I GATC 3 cut(s) 127, 149, 154
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 1 cut(s) 45
Lsp1109I GCAGC 1 cut(s) 47
MaeI CTAG 1 cut(s) 131
MalI GATC 3 cut(s) 129, 151, 156
MboI GATC 3 cut(s) 127, 149, 154
MflI RGATCY 2 cut(s) 127, 149
MnlI CCTC 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 3 cut(s) 127, 149, 154
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 37
PshAI GACNNNNGTC 1 cut(s) 96
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 2 cut(s) 127, 149
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 3 cut(s) 127, 149, 154
SetI ASST 1 cut(s) 144
SfcI CTRYAG 1 cut(s) 33
SgeI CNNG 4 cut(s) 38, 44, 143, 151
SspMI CTAG 1 cut(s) 131
StyI CCWWGG 1 cut(s) 138
TfiI GAWTC 1 cut(s) 22
TseI GCWGC 1 cut(s) 35
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.