Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001140.1

Orthogroup ID

OG0024915

Physical Location & Seq

Genomic Coordinates Forward (+)

20731 .. 25462

Gene Structure 4732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001140.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggagggaggaagtacgtgtgctggtgatggcggcggcggcgggaacggcgacaccgacaacagtagtggcaacggcggtggttcttcaatatgtggagtccgattccaccatatcaaaattttggggaaggcggcagggtcgatggtagatggaggtggctcctatgagtacggcggcggtccaggttcctccttgaatcatcttttaattgcttcttgtagctcgaaaaggaaggatgacgccaacgcctactttgtcatcgtcttcgacccaccccacccctacgccagtattctctgcatgttcaatccctccttagtcaaggacatcaaaagtgcctgttcgatccccatcatggccagatctggggtcgggcatttcattgaggctcagatccttgaagccatcaaggtggactacctcaacgagagcgaatatctcgccgtcgccaatgaagaccatcataaacaagcagaaaacgcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0046982 GO:0046983

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SOR_SNZ

Protein Analysis

162

Amino Acids

16.71

Weight (kDa)

5.36

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024915)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0488641
rosa_multiflora	Rmu_sc0001140.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	485
AciI	CCGC	8 cut(s)	33, 36, 39, 42, 78, 134, 177, 180
AclWI	GGATC	2 cut(s)	343, 391
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	1 cut(s)	120
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	2 cut(s)	16, 173
AfiI	CCNNNNNNNGG	2 cut(s)	358, 369
AflIII	ACRYGT	2 cut(s)	17, 483
AgsI	TTSAA	4 cut(s)	90, 199, 310, 404
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	1 cut(s)	225
AluI	AGCT	1 cut(s)	225
AlwI	GGATC	2 cut(s)	343, 391
AoxI	GGCC	1 cut(s)	360
ApoI	RAATTY	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	362
BbsI	GAAGAC	2 cut(s)	259, 465
BccI	CCATC	6 cut(s)	23, 139, 146, 362, 416, 471
BceAI	ACGGC	4 cut(s)	64, 91, 190, 431
BciT130I	CCWGG	1 cut(s)	186
BglII	AGATCT	1 cut(s)	365
BisI	GCNGC	5 cut(s)	34, 37, 40, 135, 178
BlsI	GCNGC	5 cut(s)	35, 38, 41, 136, 179
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	163, 190
BmrFI	CCNGG	1 cut(s)	186
BpiI	GAAGAC	2 cut(s)	259, 465
BsaAI	YACGTR	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 369
Bse1I	ACTGG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	353
BseBI	CCWGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	353
BseLI	CCNNNNNNNGG	2 cut(s)	358, 369
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	485
BshFI	GGCC	1 cut(s)	362
BslI	CCNNNNNNNGG	2 cut(s)	358, 369
BsnI	GGCC	1 cut(s)	362
Bsp143I	GATC	3 cut(s)	348, 365, 396
BspACI	CCGC	8 cut(s)	33, 36, 39, 42, 78, 134, 177, 180
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	485
BspLI	GGNNCC	2 cut(s)	163, 190
BspPI	GGATC	2 cut(s)	343, 391
BsrI	ACTGG	1 cut(s)	291
BssMI	GATC	3 cut(s)	348, 365, 396
BssNI	GRCGYC	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	243
BstBAI	YACGTR	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	319, 393
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	485
BstKTI	GATC	3 cut(s)	351, 368, 399
BstMBI	GATC	3 cut(s)	348, 365, 396
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 48, 482
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	184
BstUI	CGCG	1 cut(s)	485
BstV2I	GAAGAC	2 cut(s)	259, 465
BstX2I	RGATCY	2 cut(s)	365, 396
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	2 cut(s)	365, 396
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	182
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	15, 172
CspCI	CAANNNNNGTGG	4 cut(s)	49, 61, 84, 96
CviAII	CATG	2 cut(s)	304, 358
CviJI	RGCY	5 cut(s)	162, 225, 362, 392, 407
CviKI_1	RGCY	5 cut(s)	162, 225, 362, 392, 407
CviQI	GTAC	2 cut(s)	15, 172
DdeI	CTNAG	2 cut(s)	319, 393
DpnI	GATC	3 cut(s)	350, 367, 398
DpnII	GATC	3 cut(s)	348, 365, 396
EaeI	YGGCCR	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	184
FaeI	CATG	2 cut(s)	307, 361
FaiI	YATR	6 cut(s)	94, 114, 168, 305, 359, 468
FatI	CATG	2 cut(s)	303, 357
FauI	CCCGC	1 cut(s)	35
Fnu4HI	GCNGC	5 cut(s)	34, 37, 40, 135, 178
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	5 cut(s)	34, 37, 40, 135, 178
GluI	GCNGC	5 cut(s)	34, 37, 40, 135, 178
HaeIII	GGCC	1 cut(s)	362
HgaI	GACGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	307, 361
HinfI	GANTC	3 cut(s)	99, 105, 199
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	2 cut(s)	104, 396
Hpy8I	GTNNAC	1 cut(s)	418
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	2 cut(s)	124, 229
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	1 cut(s)	303
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 48, 482
HpyF3I	CTNAG	2 cut(s)	319, 393
HpySE526I	ACGT	1 cut(s)	17
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	307, 361
Kzo9I	GATC	3 cut(s)	348, 365, 396
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	8 cut(s)	9, 123, 171, 198, 304, 354, 355, 376
MaeII	ACGT	1 cut(s)	17
MalI	GATC	3 cut(s)	350, 367, 398
MboI	GATC	3 cut(s)	348, 365, 396
MboII	GAAGA	3 cut(s)	78, 259, 470
MflI	RGATCY	2 cut(s)	365, 396
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	2 cut(s)	120, 210
MluI	ACGCGT	1 cut(s)	483
MluNI	TGGCCA	1 cut(s)	362
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	5 cut(s)	149, 202, 325, 382, 434
Mox20I	TGGCCA	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	413
Msp20I	TGGCCA	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	485
MwoI	GCNNNNNNNGC	3 cut(s)	39, 48, 482
NdeII	GATC	3 cut(s)	348, 365, 396
NlaIII	CATG	2 cut(s)	307, 361
NlaIV	GGNNCC	2 cut(s)	163, 190
NspI	RCATGY	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	105, 199
PkrI	GCNGC	5 cut(s)	35, 38, 41, 136, 179
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Ppu21I	YACGTR	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	163, 190
PspPI	GGNCC	1 cut(s)	182
PsuI	RGATCY	2 cut(s)	365, 396
RsaI	GTAC	2 cut(s)	16, 173
RsaNI	GTAC	2 cut(s)	15, 172
RseI	CAYNNNNRTG	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	5 cut(s)	34, 37, 40, 135, 178
Sau3AI	GATC	3 cut(s)	348, 365, 396
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	6 cut(s)	20, 160, 190, 227, 417, 426
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	413
Sse9I	AATT	2 cut(s)	120, 210
SsiI	CCGC	8 cut(s)	33, 36, 39, 42, 78, 134, 177, 180
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	4 cut(s)	143, 227, 270, 347
TasI	AATT	2 cut(s)	120, 210
TauI	GCSGC	5 cut(s)	36, 39, 42, 137, 180
TfiI	GAWTC	2 cut(s)	105, 199
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	373, 471
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.