Rroxscaffold_1G00039440

Belongs to the PdxS SNZ family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0024915
Physical Location & Seq
Reverse (-)
57107725 .. 57120524
12800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039440.1

Sequence Viewer

Length: 621 bp
ATGTCGTTCTATCGAGTTGTTGCTTTGGGATCACTACTCCATCCTTTTTCGGCCTTCAATCTAAATGGGTTTTGTGATGACAAGTCTTTGGATTGTTTTGTTTCGATTATCGATCTAGTAGCCAAGGTGAAAAGATCGATGCGGTTGAAGGGTGAAGCAAGGCTAAAAGGAGGATTATATCTTAGTCACCATGCTGCCCGAGTTGATGTCCTAGGCCTCCTATTGTGCTGTTGCGCCAACTCCGGTGGAAGATGGAATAGTGAAATTTTGGTGACCCAAACGGTTCGGTCGCCATCTATAATTGCAGTGCAATCGTCGACGCGAAGATCAAGCCAAGCTCACCTAGGACGCCAACGCCTACTTTGTCATCGTCTTCGACCCTCCCTACCCCTACGCCGCATTCTCTACATGTTTTATCCCTCCCTAGTCAAGGACATCAAACGTGCCGATTCGATCCCCATCATGGCCAGATCCGGGGTTGGGCATTTCATCGAGGCTCGGATCCTTGAAGCCATCAAGGTGGACTACCTCAACGAGAGTGAATATCTCGCCGTCGCCAATGAAGACCATCATAAACAAGCAAAAACGCGTAATAGGTGGTGTGATAAGGATTTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0046982 GO:0046983
KEGG Pathways
Metabolic & Signaling
ko00750 map00750
Pfam Domains
Protein Families
SOR_SNZ

Protein Analysis

206

Amino Acids

23.27

Weight (kDa)

9.73

Isoelectric Point (pI)

64.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOR_SNZ PF01680 136 - 193 2.5e-16 SOR/SNZ family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024915)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0488641
rosa_multiflora Rmu_sc0001140.1_g000007
rosa_roxburghii Rroxscaffold_1G00039440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 317
AccII CGCG 2 cut(s) 322, 589
AciI CCGC 2 cut(s) 142, 397
AclWI GGATC 5 cut(s) 37, 448, 465, 496, 509
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 349
AfiI CCNNNNNNNGG 4 cut(s) 430, 463, 474, 480
AflIII ACRYGT 2 cut(s) 408, 587
AgsI TTSAA 3 cut(s) 58, 148, 509
AluBI AGCT 1 cut(s) 338
AluI AGCT 1 cut(s) 338
AlwI GGATC 5 cut(s) 37, 448, 465, 496, 509
Ama87I CYCGRG 1 cut(s) 198
AoxI GGCC 3 cut(s) 51, 214, 465
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 264
AspA2I CCTAGG 2 cut(s) 211, 343
AspLEI GCGC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 475
AsuHPI GGTGA 5 cut(s) 139, 164, 179, 283, 332
AvaI CYCGRG 1 cut(s) 198
AvrII CCTAGG 2 cut(s) 211, 343
BalI TGGCCA 1 cut(s) 467
BamHI GGATCC 1 cut(s) 501
BbsI GAAGAC 2 cut(s) 365, 570
BbvI GCAGC 1 cut(s) 181
BccI CCATC 6 cut(s) 48, 246, 301, 467, 521, 576
BceAI ACGGC 1 cut(s) 536
BcgI CGANNNNNNTGC 2 cut(s) 294, 328
BcnI CCSGG 1 cut(s) 475
BfaI CTAG 4 cut(s) 116, 212, 344, 425
BisI GCNGC 2 cut(s) 195, 397
BlnI CCTAGG 2 cut(s) 211, 343
BlsI GCNGC 2 cut(s) 196, 398
Bme1390I CCNGG 1 cut(s) 475
BmeT110I CYCGRG 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 503
BmrFI CCNGG 1 cut(s) 475
BmsI GCATC 1 cut(s) 129
BpiI GAAGAC 2 cut(s) 365, 570
BpuMI CCSGG 1 cut(s) 475
Bsa29I ATCGAT 2 cut(s) 111, 137
BsaBI GATNNNNATC 1 cut(s) 458
BsaHI GRCGYC 1 cut(s) 349
BsaJI CCNNGG 4 cut(s) 123, 211, 343, 474
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 4 cut(s) 430, 463, 474, 480
Bse8I GATNNNNATC 1 cut(s) 458
BseCI ATCGAT 2 cut(s) 111, 137
BseDI CCNNGG 4 cut(s) 123, 211, 343, 474
BseGI GGATG 1 cut(s) 40
BseJI GATNNNNATC 1 cut(s) 458
BseLI CCNNNNNNNGG 4 cut(s) 430, 463, 474, 480
BseXI GCAGC 1 cut(s) 181
Bsh1236I CGCG 2 cut(s) 322, 589
Bsh1285I CGRYCG 1 cut(s) 290
BshFI GGCC 3 cut(s) 53, 216, 467
BshVI ATCGAT 2 cut(s) 111, 137
BsiEI CGRYCG 1 cut(s) 290
BsiHKCI CYCGRG 1 cut(s) 198
BsiSI CCGG 2 cut(s) 243, 474
BslI CCNNNNNNNGG 4 cut(s) 430, 463, 474, 480
BsmI GAATGC 1 cut(s) 399
BsnI GGCC 3 cut(s) 53, 216, 467
BsoBI CYCGRG 1 cut(s) 198
Bsp143I GATC 7 cut(s) 29, 112, 134, 326, 453, 470, 501
BspACI CCGC 2 cut(s) 142, 397
BspANI GGCC 3 cut(s) 53, 216, 467
BspDI ATCGAT 2 cut(s) 111, 137
BspFNI CGCG 2 cut(s) 322, 589
BspLI GGNNCC 1 cut(s) 503
BspPI GGATC 5 cut(s) 37, 448, 465, 496, 509
BssECI CCNNGG 4 cut(s) 123, 211, 343, 474
BssMI GATC 7 cut(s) 29, 112, 134, 326, 453, 470, 501
BssNI GRCGYC 1 cut(s) 349
BssT1I CCWWGG 3 cut(s) 123, 211, 343
Bst4CI ACNGT 1 cut(s) 283
BstACI GRCGYC 1 cut(s) 349
BstDEI CTNAG 1 cut(s) 182
BstEII GGTNACC 1 cut(s) 271
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 1 cut(s) 40
BstFNI CGCG 2 cut(s) 322, 589
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 7 cut(s) 32, 115, 137, 329, 456, 473, 504
BstMBI GATC 7 cut(s) 29, 112, 134, 326, 453, 470, 501
BstMCI CGRYCG 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 412
BstPI GGTNACC 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 473
BstUI CGCG 2 cut(s) 322, 589
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 2 cut(s) 365, 570
BstX2I RGATCY 2 cut(s) 470, 501
BstXI CCANNNNNNTGG 1 cut(s) 520
BstYI RGATCY 2 cut(s) 470, 501
Bsu15I ATCGAT 2 cut(s) 111, 137
BsuRI GGCC 3 cut(s) 53, 216, 467
BsuTUI ATCGAT 2 cut(s) 111, 137
BtsCI GGATG 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
CfoI GCGC 1 cut(s) 236
ClaI ATCGAT 2 cut(s) 111, 137
CseI GACGC 2 cut(s) 328, 357
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviAII CATG 3 cut(s) 191, 409, 463
CviJI RGCY 9 cut(s) 53, 122, 163, 216, 333, 338, 467, 497, 512
CviKI_1 RGCY 9 cut(s) 53, 122, 163, 216, 333, 338, 467, 497, 512
DdeI CTNAG 1 cut(s) 182
DpnI GATC 7 cut(s) 31, 114, 136, 328, 455, 472, 503
DpnII GATC 7 cut(s) 29, 112, 134, 326, 453, 470, 501
EaeI YGGCCR 1 cut(s) 465
Eco130I CCWWGG 3 cut(s) 123, 211, 343
Eco147I AGGCCT 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 198
Eco91I GGTNACC 1 cut(s) 271
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoO65I GGTNACC 1 cut(s) 271
EcoT14I CCWWGG 3 cut(s) 123, 211, 343
ErhI CCWWGG 3 cut(s) 123, 211, 343
FaeI CATG 3 cut(s) 194, 412, 466
FaiI YATR 6 cut(s) 178, 192, 299, 410, 464, 573
FatI CATG 3 cut(s) 190, 408, 462
FblI GTMKAC 1 cut(s) 317
Fnu4HI GCNGC 2 cut(s) 195, 397
FokI GGATG 1 cut(s) 27
Fsp4HI GCNGC 2 cut(s) 195, 397
FspBI CTAG 4 cut(s) 116, 212, 344, 425
GlaI GCGC 1 cut(s) 235
GluI GCNGC 2 cut(s) 195, 397
HaeIII GGCC 3 cut(s) 53, 216, 467
HapII CCGG 2 cut(s) 243, 474
HgaI GACGC 2 cut(s) 328, 357
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 349
Hin1II CATG 3 cut(s) 194, 412, 466
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HinfI GANTC 1 cut(s) 449
HpaII CCGG 2 cut(s) 243, 474
HphI GGTGA 5 cut(s) 139, 164, 179, 283, 332
Hpy166II GTNNAC 2 cut(s) 318, 523
Hpy188I TCNGA 1 cut(s) 501
Hpy8I GTNNAC 2 cut(s) 318, 523
Hpy99I CGWCG 3 cut(s) 319, 322, 557
HpyAV CCTTC 2 cut(s) 64, 142
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 2 cut(s) 305, 310
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 442
Hsp92I GRCGYC 1 cut(s) 349
Hsp92II CATG 3 cut(s) 194, 412, 466
HspAI GCGC 1 cut(s) 234
Kzo9I GATC 7 cut(s) 29, 112, 134, 326, 453, 470, 501
LpnPI CCDG 3 cut(s) 256, 481, 487
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 1 cut(s) 129
MaeI CTAG 4 cut(s) 116, 212, 344, 425
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 2 cut(s) 185, 271
MalI GATC 7 cut(s) 31, 114, 136, 328, 455, 472, 503
MboI GATC 7 cut(s) 29, 112, 134, 326, 453, 470, 501
MboII GAAGA 4 cut(s) 261, 336, 365, 575
MflI RGATCY 2 cut(s) 470, 501
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 2 cut(s) 264, 300
MluI ACGCGT 1 cut(s) 587
MluNI TGGCCA 1 cut(s) 467
MnlI CCTC 6 cut(s) 164, 227, 391, 430, 487, 539
Mox20I TGGCCA 1 cut(s) 467
MscI TGGCCA 1 cut(s) 467
MslI CAYNNNNRTG 1 cut(s) 518
Msp20I TGGCCA 1 cut(s) 467
MspI CCGG 2 cut(s) 243, 474
MspR9I CCNGG 1 cut(s) 475
Mva1269I GAATGC 1 cut(s) 399
MvnI CGCG 2 cut(s) 322, 589
NciI CCSGG 1 cut(s) 475
NdeII GATC 7 cut(s) 29, 112, 134, 326, 453, 470, 501
NlaIII CATG 3 cut(s) 194, 412, 466
NlaIV GGNNCC 1 cut(s) 503
NmuCI GTSAC 2 cut(s) 185, 271
NspI RCATGY 1 cut(s) 412
PceI AGGCCT 1 cut(s) 216
PciI ACATGT 1 cut(s) 408
PctI GAATGC 1 cut(s) 399
PfeI GAWTC 1 cut(s) 449
PkrI GCNGC 2 cut(s) 196, 398
PscI ACATGT 1 cut(s) 408
PspEI GGTNACC 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 503
PsuI RGATCY 2 cut(s) 470, 501
RseI CAYNNNNRTG 1 cut(s) 518
SalI GTCGAC 1 cut(s) 316
SatI GCNGC 2 cut(s) 195, 397
Sau3AI GATC 7 cut(s) 29, 112, 134, 326, 453, 470, 501
ScrFI CCNGG 1 cut(s) 475
SetI ASST 7 cut(s) 129, 340, 345, 445, 522, 531, 599
SfaNI GCATC 1 cut(s) 129
SgrDI CGTCGACG 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 518
Sse9I AATT 2 cut(s) 264, 300
SseBI AGGCCT 1 cut(s) 216
SsiI CCGC 2 cut(s) 142, 397
SspMI CTAG 4 cut(s) 116, 212, 344, 425
StuI AGGCCT 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 473
StyI CCWWGG 3 cut(s) 123, 211, 343
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 1 cut(s) 445
TaqI TCGA 8 cut(s) 13, 104, 111, 137, 317, 376, 452, 492
TaqII GACCGA 1 cut(s) 276
TasI AATT 2 cut(s) 264, 300
TauI GCSGC 1 cut(s) 399
TfiI GAWTC 1 cut(s) 449
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 2 cut(s) 185, 271
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 2 cut(s) 185, 271
TspDTI ATGAA 2 cut(s) 478, 576
TspRI CASTG 1 cut(s) 312
XagI CCTNNNNNAGG 1 cut(s) 428
XapI RAATTY 1 cut(s) 264
XceI RCATGY 1 cut(s) 412
XmaJI CCTAGG 2 cut(s) 211, 343
XmiI GTMKAC 1 cut(s) 317
XspI CTAG 4 cut(s) 116, 212, 344, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.