Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024981

Physical Location & Seq

Genomic Coordinates Reverse (-)

1565540 .. 1567926

Gene Structure 2387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35935

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGAGTTTGGGGGAGGAGTCATATATACCTTATTTAACAGATGCCTTGTTAGAAGTTGATGCTCGTGTTCTCTACCGAAGTGTTATTTCCCCATCAATTAATGATGATCGAATTCTCAATGAGCTTCGCAAGTTAATGATGATGCAAACCAGAGTCTTTATTGTCCACATGACGACCAATCTAGCGACAAGGATATTTTCCAAAGCAAAAGATCAGATTGGAATGATGAGCCAAGGCTATATTTGGCTATTCACCAATGGGATAACTAATAGCTTGCAGTTGATGAACTCCTTATCCATCAATTCCATGAAAGGTGTATTAGGTGCGTATGATGCAACTATTGCACTAGCCATGGCAATTGAAAAAGTTGGAACTACAAGCGTTGGCTTCCCAAGGACGAATGAATACTTGAACTCAGCCGATCCTCATAGTTTTGAGGTCTCCAAATACGGTACAAAACTTAGTCAAGCCTTTCTAGTTTCTAGATTCGAAGGCATTGCTGGACATTACAATCTCATTCATGGGCTACTTCAAGCAACAACTTTTCAGATGATCCCAATTCACGGCAAGAAGTTGAGAATAGGTGTTCCTCTAAATGTTCAATTCAAAGAGTTCCTTACGATCATCAAAGATCCAAATACTAACACAACAGAAGTGAGAGGGTATGCCGTTGACGTCTTTAAGGCTGCAACAAAATTATTAGCTTACGAGTTAATTCCTTTTGCCAAGCCTGATGGCACCAGCGCTGACACTGACAATGATTTGGTATATCAAGTACATCATGGGAACTTCGATGCGGTAGTAGGAGATATAACGATTCGAGCAAATAAATACCAAGAAAAGAAATGCATGGGTTTTCTTACAAGGGATCTTCGGTTGACGACCTCTTGTTTCTTCATCTTTATTGGTTTTGTGGTTTGGGTTCTTGAACATCAAATTAATGAAGACTTCCGTGGGACTCCCTCCCATCAAGTTGGCACTAGCCTCTGGTTCTCATTCTCAACAATGGTTTTTGCACACAGTGAAAGAGTTATCATTAACTTGGCAAGATTCGTGATGATCATATGGGTATTTGTTATGTTAATGCTGACACAAAGTTACACAGCGAATTTGGCATCAGTATTAACGGTCCAACAATTACAACCAACTGTTACCATTATAAGGGACATTTTAAGGAACGGGGAGTGTTGGCTACGCAACAGATGCGTATCTGTATGGTATCTTGAAACAGTTGGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

413

Amino Acids

46.74

Weight (kDa)

8.24

Isoelectric Point (pI)

22.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	7 - 108	4.5e-16	Receptor family ligand binding region
Lig_chan	PF00060	293 - 393	4.4e-27	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024981)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385951
rosa_laevigata	RLG00000010198
rosa_roxburghii	Rroxscaffold_5G00333570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1160
AatII	GACGTC	1 cut(s)	678
AccB1I	GGYRCC	1 cut(s)	737
AciI	CCGC	1 cut(s)	797
AclWI	GGATC	4 cut(s)	416, 547, 626, 876
AcsI	RAATTY	2 cut(s)	111, 1108
AcyI	GRCGYC	1 cut(s)	675
AdeI	CACNNNGTG	1 cut(s)	1022
AfaI	GTAC	2 cut(s)	454, 777
AfeI	AGCGCT	1 cut(s)	745
AfiI	CCNNNNNNNGG	2 cut(s)	563, 1161
AgsI	TTSAA	7 cut(s)	362, 412, 533, 602, 607, 929, 1226
AloI	GAACNNNNNNTCC	2 cut(s)	278, 310
AluBI	AGCT	3 cut(s)	124, 273, 704
AluI	AGCT	3 cut(s)	124, 273, 704
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	4 cut(s)	416, 547, 626, 876
Aor51HI	AGCGCT	1 cut(s)	745
ApeKI	GCWGC	1 cut(s)	686
ApoI	RAATTY	2 cut(s)	111, 1108
AseI	ATTAAT	2 cut(s)	99, 939
AspLEI	GCGC	1 cut(s)	746
AspS9I	GGNCC	1 cut(s)	1129
AsuHPI	GGTGA	1 cut(s)	244
AsuII	TTCGAA	1 cut(s)	489
AvaII	GGWCC	1 cut(s)	1129
BanI	GGYRCC	1 cut(s)	737
BauI	CACGAG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	951
BbvI	GCAGC	1 cut(s)	673
BccI	CCATC	4 cut(s)	100, 305, 728, 975
BceAI	ACGGC	2 cut(s)	580, 653
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BclI	TGATCA	1 cut(s)	1059
BcoDI	GTCTC	1 cut(s)	445
BfaI	CTAG	5 cut(s)	182, 347, 476, 483, 981
BfoI	RGCGCY	1 cut(s)	747
BisI	GCNGC	1 cut(s)	687
BlsI	GCNGC	1 cut(s)	688
Bme18I	GGWCC	1 cut(s)	1129
BmgT120I	GGNCC	1 cut(s)	1129
BmiI	GGNNCC	1 cut(s)	739
BmsI	GCATC	7 cut(s)	31, 49, 132, 322, 784, 1124, 1193
BpiI	GAAGAC	1 cut(s)	951
Bpu14I	TTCGAA	1 cut(s)	489
BsaBI	GATNNNNATC	1 cut(s)	1207
BsaHI	GRCGYC	1 cut(s)	675
BsaI	GGTCTC	1 cut(s)	445
BsaJI	CCNNGG	4 cut(s)	232, 351, 392, 952
Bsc4I	CCNNNNNNNGG	2 cut(s)	563, 1161
Bse3DI	GCAATG	1 cut(s)	495
Bse8I	GATNNNNATC	1 cut(s)	1207
BseDI	CCNNGG	4 cut(s)	232, 351, 392, 952
BseJI	GATNNNNATC	1 cut(s)	1207
BseLI	CCNNNNNNNGG	2 cut(s)	563, 1161
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	1 cut(s)	429
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	673
BshNI	GGYRCC	1 cut(s)	737
BslFI	GGGAC	2 cut(s)	970, 1178
BslI	CCNNNNNNNGG	2 cut(s)	563, 1161
BsmAI	GTCTC	1 cut(s)	445
BsmFI	GGGAC	2 cut(s)	970, 1178
Bso31I	GGTCTC	1 cut(s)	445
Bsp119I	TTCGAA	1 cut(s)	489
Bsp143I	GATC	8 cut(s)	106, 211, 421, 552, 621, 631, 868, 1059
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	1 cut(s)	797
BspCNI	CTCAG	1 cut(s)	428
BspLI	GGNNCC	1 cut(s)	739
BspPI	GGATC	4 cut(s)	416, 547, 626, 876
BspT104I	TTCGAA	1 cut(s)	489
BspT107I	GGYRCC	1 cut(s)	737
BspTNI	GGTCTC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	495
BssECI	CCNNGG	4 cut(s)	232, 351, 392, 952
BssMI	GATC	8 cut(s)	106, 211, 421, 552, 621, 631, 868, 1059
BssNI	GRCGYC	1 cut(s)	675
BssSI	CACGAG	1 cut(s)	63
BssT1I	CCWWGG	3 cut(s)	232, 351, 392
Bst2BI	CACGAG	1 cut(s)	63
Bst4CI	ACNGT	5 cut(s)	452, 1022, 1129, 1150, 1231
BstACI	GRCGYC	1 cut(s)	675
BstAPI	GCANNNNNTGC	2 cut(s)	341, 1203
BstBI	TTCGAA	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	2 cut(s)	415, 461
BstDSI	CCRYGG	2 cut(s)	351, 952
BstH2I	RGCGCY	1 cut(s)	747
BstHHI	GCGC	1 cut(s)	746
BstKTI	GATC	8 cut(s)	109, 214, 424, 555, 624, 634, 871, 1062
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	8 cut(s)	106, 211, 421, 552, 621, 631, 868, 1059
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 341, 1112, 1203
BstV1I	GCAGC	1 cut(s)	673
BstV2I	GAAGAC	1 cut(s)	951
BstX2I	RGATCY	2 cut(s)	631, 868
BstXI	CCANNNNNNTGG	1 cut(s)	974
BstYI	RGATCY	2 cut(s)	631, 868
BtgI	CCRYGG	2 cut(s)	351, 952
BtsIMutI	CAGTG	2 cut(s)	750, 1027
Cac8I	GCNNGC	1 cut(s)	275
CfoI	GCGC	1 cut(s)	746
Cfr13I	GGNCC	1 cut(s)	1129
Csp6I	GTAC	2 cut(s)	453, 776
CviAII	CATG	6 cut(s)	169, 307, 352, 521, 782, 850
CviQI	GTAC	2 cut(s)	453, 776
DdeI	CTNAG	2 cut(s)	415, 461
DpnI	GATC	8 cut(s)	108, 213, 423, 554, 623, 633, 870, 1061
DpnII	GATC	8 cut(s)	106, 211, 421, 552, 621, 631, 868, 1059
DraIII	CACNNNGTG	1 cut(s)	1022
Eco130I	CCWWGG	3 cut(s)	232, 351, 392
Eco31I	GGTCTC	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	1129
Eco47III	AGCGCT	1 cut(s)	745
EcoRI	GAATTC	1 cut(s)	111
EcoT14I	CCWWGG	3 cut(s)	232, 351, 392
EcoT22I	ATGCAT	1 cut(s)	851
ErhI	CCWWGG	3 cut(s)	232, 351, 392
FaeI	CATG	6 cut(s)	172, 310, 355, 524, 785, 853
FalI	AAGNNNNNCTT	2 cut(s)	600, 632
FaqI	GGGAC	2 cut(s)	970, 1178
FatI	CATG	6 cut(s)	168, 306, 351, 520, 781, 849
FauNDI	CATATG	1 cut(s)	1064
FbaI	TGATCA	1 cut(s)	1059
Fnu4HI	GCNGC	1 cut(s)	687
Fsp4HI	GCNGC	1 cut(s)	687
FspBI	CTAG	5 cut(s)	182, 347, 476, 483, 981
GlaI	GCGC	1 cut(s)	745
GluI	GCNGC	1 cut(s)	687
HaeII	RGCGCY	1 cut(s)	747
HhaI	GCGC	1 cut(s)	746
Hin1I	GRCGYC	1 cut(s)	675
Hin1II	CATG	6 cut(s)	172, 310, 355, 524, 785, 853
Hin6I	GCGC	1 cut(s)	744
HinP1I	GCGC	1 cut(s)	744
HincII	GTYRAC	2 cut(s)	673, 879
HindII	GTYRAC	2 cut(s)	673, 879
HinfI	GANTC	6 cut(s)	17, 153, 486, 817, 958, 1050
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	3 cut(s)	166, 673, 879
Hpy188I	TCNGA	2 cut(s)	216, 549
Hpy188III	TCNNGA	4 cut(s)	483, 926, 1054, 1223
Hpy8I	GTNNAC	3 cut(s)	166, 673, 879
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	5 cut(s)	452, 1022, 1129, 1150, 1231
HpyCH4IV	ACGT	1 cut(s)	675
HpyCH4V	TGCA	7 cut(s)	145, 277, 335, 344, 689, 849, 1016
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 341, 1112, 1203
HpyF3I	CTNAG	2 cut(s)	415, 461
HpySE526I	ACGT	1 cut(s)	675
Hsp92I	GRCGYC	1 cut(s)	675
Hsp92II	CATG	6 cut(s)	172, 310, 355, 524, 785, 853
HspAI	GCGC	1 cut(s)	744
Ksp22I	TGATCA	1 cut(s)	1059
Kzo9I	GATC	8 cut(s)	106, 211, 421, 552, 621, 631, 868, 1059
LpnPI	CCDG	5 cut(s)	163, 486, 744, 754, 973
Lsp1109I	GCAGC	1 cut(s)	673
LweI	GCATC	7 cut(s)	31, 49, 132, 322, 784, 1124, 1193
MaeI	CTAG	5 cut(s)	182, 347, 476, 483, 981
MaeII	ACGT	1 cut(s)	675
MaeIII	GTNAC	2 cut(s)	1097, 1150
MalI	GATC	8 cut(s)	108, 213, 423, 554, 623, 633, 870, 1061
MboI	GATC	8 cut(s)	106, 211, 421, 552, 621, 631, 868, 1059
MboII	GAAGA	3 cut(s)	863, 886, 956
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	2 cut(s)	631, 868
MlyI	GAGTC	3 cut(s)	26, 162, 952
MmeI	TCCRAC	2 cut(s)	349, 1156
MnlI	CCTC	8 cut(s)	7, 430, 435, 600, 653, 895, 973, 995
Mph1103I	ATGCAT	1 cut(s)	851
MunI	CAATTG	1 cut(s)	357
MwoI	GCNNNNNNNGC	4 cut(s)	332, 341, 1112, 1203
NcoI	CCATGG	1 cut(s)	351
NdeI	CATATG	1 cut(s)	1064
NdeII	GATC	8 cut(s)	106, 211, 421, 552, 621, 631, 868, 1059
NlaIII	CATG	6 cut(s)	172, 310, 355, 524, 785, 853
NlaIV	GGNNCC	1 cut(s)	739
NsiI	ATGCAT	1 cut(s)	851
NspV	TTCGAA	1 cut(s)	489
PfeI	GAWTC	3 cut(s)	486, 817, 1050
PkrI	GCNGC	1 cut(s)	688
PleI	GAGTC	3 cut(s)	25, 161, 952
PpsI	GAGTC	3 cut(s)	25, 161, 952
PshBI	ATTAAT	2 cut(s)	99, 939
PsiI	TTATAA	1 cut(s)	1160
PspN4I	GGNNCC	1 cut(s)	739
PspPI	GGNCC	1 cut(s)	1129
PsuI	RGATCY	2 cut(s)	631, 868
RsaI	GTAC	2 cut(s)	454, 777
RsaNI	GTAC	2 cut(s)	453, 776
SatI	GCNGC	1 cut(s)	687
Sau3AI	GATC	8 cut(s)	106, 211, 421, 552, 621, 631, 868, 1059
Sau96I	GGNCC	1 cut(s)	1129
SchI	GAGTC	3 cut(s)	26, 162, 952
SfaNI	GCATC	7 cut(s)	31, 49, 132, 322, 784, 1124, 1193
SfuI	TTCGAA	1 cut(s)	489
SinI	GGWCC	1 cut(s)	1129
SsiI	CCGC	1 cut(s)	797
SspMI	CTAG	5 cut(s)	182, 347, 476, 483, 981
StyI	CCWWGG	3 cut(s)	232, 351, 392
TaaI	ACNGT	5 cut(s)	452, 1022, 1129, 1150, 1231
TaiI	ACGT	1 cut(s)	678
TaqI	TCGA	4 cut(s)	109, 489, 792, 820
TatI	WGTACW	1 cut(s)	775
TfiI	GAWTC	3 cut(s)	486, 817, 1050
TscAI	CASTG	2 cut(s)	757, 1027
TseI	GCWGC	1 cut(s)	686
TspDTI	ATGAA	6 cut(s)	299, 323, 417, 509, 886, 957
TspGWI	ACGGA	1 cut(s)	941
TspRI	CASTG	2 cut(s)	757, 1027
VpaK11BI	GGWCC	1 cut(s)	1129
VspI	ATTAAT	2 cut(s)	99, 939
XapI	RAATTY	2 cut(s)	111, 1108
XbaI	TCTAGA	1 cut(s)	482
XspI	CTAG	5 cut(s)	182, 347, 476, 483, 981
ZraI	GACGTC	1 cut(s)	676
Zsp2I	ATGCAT	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.