Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0024981

Physical Location & Seq

Genomic Coordinates Forward (+)

64077013 .. 64079201

Gene Structure 2189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010198

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGATGAAAAAATGCTATGTTTGGCTATCCACTAATGGGATAACTAATAGCTTGCAGTTGATGAACTCCTCATCCATCAATTCCATGCAAGGTGTATTAGGTGTACAAACATATGTTGCAAAAACAATACAGCTTGAAAAATTAATGCTACGGTGGAAAAGGCCAATCCAACAAAACAACCGAACAATATATAATATTGATGTTGAATTGGACGTTTTTGGTCTTTGGGCGTATGATGCAACTATTGCACTAGCCATGGCAATTGAAGAGGTTGGAACTACAAGCGTTGGCTTCCCAAGGACGAATGAATCCTTGAACTCAGCCGATCCTCAAAGTTTTGAGGTCTCTAAATACGGTACAAAACTTAGCCAAGCCTTGCTAGTTACTAGATTCGAAGGCATTGCTGGATATTTCAATCTTATTCATGGGCAACTTCAAGCAACAACTTTTCAGATAGTAAACATAAATGACGATGGAGCAAGAGCAATTGGATTTTGGACAACAAAAAATGGCCTTGAAAACAAATTGAATTTACAGCAAACAGAACCACACCTTCAACTTATTCTGAGACCATACTTTGAACCCATTGTATGGCCCGGAGACTCTAGCTCTGTGTCGAAGGGATGGGAGATCCCAATTCATGGCAAGAAGTTGAGAATAGGTGAAAGAGTTATCAGTAACTTGGCAAGATTTGTGATGATCATATGGGTATTTGTTATGTTAATACTGACACAAAGTTACACTGCGAATTTGGCATCAGTATTAACGGTCCAACAATTACAACCAACTGTTACCAGTATAAGGGACATTTTAAGGAACGGGGAGAGTGTTGGCTACGCAACAGATGCTTATCTGTATGGTATCCTGAAACAATTAGGTTTTGACGATTCCAAGCTTAAGGGCTTCAGCACTATGGAAGGGTTTGATGAAGCTCTTTCGAGAGGAAGTAAAAATGGTGGAATTGCTGCCATTGTTGATCATGAAAAGCCTACGATTACGCTTTTTCTTGAAAAATATTGTTCTAAATATACCATGATAGGACCCATCTTCAAAACGGTTGGGTTTGGATTCCTTTTGGGGCCTATTCCTCGTAGTCGGATTGGCTTCGGTGCTCGCTCTCATCATCTTTGTAGCTTCATTCCTATACAAGCATCAGCACGTCTTGATCCACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

392

Amino Acids

43.56

Weight (kDa)

9.06

Isoelectric Point (pI)

32.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	1 - 157	5.5e-20	Receptor family ligand binding region
Lig_chan	PF00060	222 - 275	2.1e-16	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024981)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385951
rosa_laevigata	RLG00000010198
rosa_roxburghii	Rroxscaffold_5G00333570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	591, 641
AclWI	GGATC	3 cut(s)	320, 625, 1160
AcsI	RAATTY	2 cut(s)	529, 748
AcuI	CTGAAG	1 cut(s)	889
AfaI	GTAC	2 cut(s)	105, 358
AfiI	CCNNNNNNNGG	4 cut(s)	36, 591, 641, 801
AflII	CTTAAG	1 cut(s)	896
AjiI	CACGTC	1 cut(s)	1160
AloI	GAACNNNNNNTCC	2 cut(s)	56, 88
AluBI	AGCT	6 cut(s)	51, 133, 609, 895, 932, 1134
AluI	AGCT	6 cut(s)	51, 133, 609, 895, 932, 1134
Alw21I	GWGCWC	1 cut(s)	1114
Alw26I	GTCTC	3 cut(s)	349, 562, 594
AlwI	GGATC	3 cut(s)	320, 625, 1160
AoxI	GGCC	4 cut(s)	161, 511, 593, 1079
ApeKI	GCWGC	1 cut(s)	965
ApoI	RAATTY	2 cut(s)	529, 748
AseI	ATTAAT	1 cut(s)	143
AspS9I	GGNCC	4 cut(s)	594, 769, 1040, 1079
AsuC2I	CCSGG	1 cut(s)	597
AsuHPI	GGTGA	1 cut(s)	674
AsuII	TTCGAA	1 cut(s)	393
AvaII	GGWCC	2 cut(s)	769, 1040
Bbv12I	GWGCWC	1 cut(s)	1114
BbvI	GCAGC	1 cut(s)	952
BccI	CCATC	4 cut(s)	83, 467, 618, 1052
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciVI	GTATCC	1 cut(s)	872
BclI	TGATCA	2 cut(s)	699, 976
BcnI	CCSGG	1 cut(s)	597
BcoDI	GTCTC	3 cut(s)	349, 562, 594
BfaI	CTAG	4 cut(s)	251, 380, 387, 606
BfrI	CTTAAG	1 cut(s)	896
BfuI	GTATCC	1 cut(s)	872
BisI	GCNGC	1 cut(s)	966
BlsI	GCNGC	1 cut(s)	967
Bme1390I	CCNGG	1 cut(s)	597
Bme18I	GGWCC	2 cut(s)	769, 1040
BmgBI	CACGTC	1 cut(s)	1160
BmgT120I	GGNCC	4 cut(s)	594, 769, 1040, 1079
BmiI	GGNNCC	2 cut(s)	1042, 1080
BmrFI	CCNGG	1 cut(s)	597
BmsI	GCATC	4 cut(s)	226, 764, 835, 1160
Bpu14I	TTCGAA	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	597
BsaBI	GATNNNNATC	1 cut(s)	849
BsaI	GGTCTC	2 cut(s)	349, 562
BsaJI	CCNNGG	2 cut(s)	255, 296
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 591, 641, 801
Bse1I	ACTGG	1 cut(s)	795
Bse3DI	GCAATG	1 cut(s)	399
Bse8I	GATNNNNATC	1 cut(s)	849
BseDI	CCNNGG	2 cut(s)	255, 296
BseGI	GGATG	2 cut(s)	71, 629
BseJI	GATNNNNATC	1 cut(s)	849
BseLI	CCNNNNNNNGG	4 cut(s)	36, 591, 641, 801
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	333, 557
BseNI	ACTGG	1 cut(s)	795
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	952
BshFI	GGCC	4 cut(s)	163, 513, 595, 1081
BsiHKAI	GWGCWC	1 cut(s)	1114
BsiSI	CCGG	1 cut(s)	597
BslFI	GGGAC	1 cut(s)	818
BslI	CCNNNNNNNGG	4 cut(s)	36, 591, 641, 801
BsmAI	GTCTC	3 cut(s)	349, 562, 594
BsmFI	GGGAC	1 cut(s)	818
BsnI	GGCC	4 cut(s)	163, 513, 595, 1081
Bso31I	GGTCTC	2 cut(s)	349, 562
Bsp119I	TTCGAA	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	1114
Bsp1407I	TGTACA	1 cut(s)	103
Bsp143I	GATC	5 cut(s)	325, 630, 699, 976, 1165
Bsp19I	CCATGG	1 cut(s)	255
BspANI	GGCC	4 cut(s)	163, 513, 595, 1081
BspCNI	CTCAG	2 cut(s)	332, 558
BspHI	TCATGA	1 cut(s)	979
BspLI	GGNNCC	2 cut(s)	1042, 1080
BspPI	GGATC	3 cut(s)	320, 625, 1160
BspT104I	TTCGAA	1 cut(s)	393
BspTI	CTTAAG	1 cut(s)	896
BspTNI	GGTCTC	2 cut(s)	349, 562
BsrDI	GCAATG	1 cut(s)	399
BsrGI	TGTACA	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	795
BssECI	CCNNGG	2 cut(s)	255, 296
BssMI	GATC	5 cut(s)	325, 630, 699, 976, 1165
BssT1I	CCWWGG	2 cut(s)	255, 296
Bst4CI	ACNGT	5 cut(s)	153, 356, 769, 790, 1057
Bst6I	CTCTTC	1 cut(s)	261
BstAFI	CTTAAG	1 cut(s)	896
BstAPI	GCANNNNNTGC	2 cut(s)	245, 845
BstAUI	TGTACA	1 cut(s)	103
BstBI	TTCGAA	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	53, 1114
BstDEI	CTNAG	3 cut(s)	319, 365, 566
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	71, 629
BstKTI	GATC	5 cut(s)	328, 633, 702, 979, 1168
BstMAI	GTCTC	3 cut(s)	349, 562, 594
BstMBI	GATC	5 cut(s)	325, 630, 699, 976, 1165
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 245, 752, 845
BstSCI	CCNGG	1 cut(s)	595
BstV1I	GCAGC	1 cut(s)	952
BstX2I	RGATCY	1 cut(s)	630
BstYI	RGATCY	1 cut(s)	630
BsuI	GTATCC	1 cut(s)	872
BsuRI	GGCC	4 cut(s)	163, 513, 595, 1081
BtgI	CCRYGG	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	1160
BtsCI	GGATG	2 cut(s)	71, 629
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	2 cut(s)	53, 1114
CciI	TCATGA	1 cut(s)	979
Cfr13I	GGNCC	4 cut(s)	594, 769, 1040, 1079
Csp6I	GTAC	2 cut(s)	104, 357
CviAII	CATG	6 cut(s)	85, 256, 425, 641, 980, 1033
CviQI	GTAC	2 cut(s)	104, 357
DdeI	CTNAG	3 cut(s)	319, 365, 566
DpnI	GATC	5 cut(s)	327, 632, 701, 978, 1167
DpnII	GATC	5 cut(s)	325, 630, 699, 976, 1165
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	2 cut(s)	255, 296
Eco31I	GGTCTC	2 cut(s)	349, 562
Eco47I	GGWCC	2 cut(s)	769, 1040
Eco57I	CTGAAG	1 cut(s)	889
EcoO109I	RGGNCCY	2 cut(s)	1040, 1079
EcoT14I	CCWWGG	2 cut(s)	255, 296
ErhI	CCWWGG	2 cut(s)	255, 296
FaeI	CATG	6 cut(s)	88, 259, 428, 644, 983, 1036
FaqI	GGGAC	1 cut(s)	818
FatI	CATG	6 cut(s)	84, 255, 424, 640, 979, 1032
FauNDI	CATATG	2 cut(s)	112, 704
FbaI	TGATCA	2 cut(s)	699, 976
Fnu4HI	GCNGC	1 cut(s)	966
FokI	GGATG	2 cut(s)	58, 636
Fsp4HI	GCNGC	1 cut(s)	966
FspBI	CTAG	4 cut(s)	251, 380, 387, 606
GluI	GCNGC	1 cut(s)	966
HaeIII	GGCC	4 cut(s)	163, 513, 595, 1081
HapII	CCGG	1 cut(s)	597
Hin1II	CATG	6 cut(s)	88, 259, 428, 644, 983, 1036
HindIII	AAGCTT	1 cut(s)	893
HinfI	GANTC	5 cut(s)	308, 390, 602, 887, 1068
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	1 cut(s)	674
Hpy166II	GTNNAC	2 cut(s)	104, 460
Hpy188I	TCNGA	3 cut(s)	453, 567, 1098
Hpy188III	TCNNGA	5 cut(s)	865, 939, 980, 1007, 1163
Hpy8I	GTNNAC	2 cut(s)	104, 460
HpyAV	CCTTC	4 cut(s)	389, 563, 613, 911
HpyCH4III	ACNGT	5 cut(s)	153, 356, 769, 790, 1057
HpyCH4IV	ACGT	2 cut(s)	213, 1159
HpyCH4V	TGCA	5 cut(s)	55, 88, 119, 239, 248
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 245, 752, 845
HpyF3I	CTNAG	3 cut(s)	319, 365, 566
HpySE526I	ACGT	2 cut(s)	213, 1159
Hsp92II	CATG	6 cut(s)	88, 259, 428, 644, 983, 1036
Ksp22I	TGATCA	2 cut(s)	699, 976
Kzo9I	GATC	5 cut(s)	325, 630, 699, 976, 1165
LmnI	GCTCC	1 cut(s)	476
LpnPI	CCDG	4 cut(s)	390, 610, 808, 878
Lsp1109I	GCAGC	1 cut(s)	952
LweI	GCATC	4 cut(s)	226, 764, 835, 1160
MaeI	CTAG	4 cut(s)	251, 380, 387, 606
MaeII	ACGT	2 cut(s)	213, 1159
MaeIII	GTNAC	4 cut(s)	382, 677, 737, 790
MalI	GATC	5 cut(s)	327, 632, 701, 978, 1167
MboI	GATC	5 cut(s)	325, 630, 699, 976, 1165
MboII	GAAGA	2 cut(s)	278, 1039
MfeI	CAATTG	2 cut(s)	261, 486
MflI	RGATCY	1 cut(s)	630
MhlI	GDGCHC	1 cut(s)	1114
MlyI	GAGTC	1 cut(s)	596
MmeI	TCCRAC	4 cut(s)	193, 253, 796, 1076
MnlI	CCTC	6 cut(s)	79, 262, 334, 339, 935, 1098
MseI	TTAA	5 cut(s)	143, 722, 764, 812, 897
MspCI	CTTAAG	1 cut(s)	896
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	1 cut(s)	597
MunI	CAATTG	2 cut(s)	261, 486
MwoI	GCNNNNNNNGC	4 cut(s)	236, 245, 752, 845
NciI	CCSGG	1 cut(s)	597
NcoI	CCATGG	1 cut(s)	255
NdeI	CATATG	2 cut(s)	112, 704
NdeII	GATC	5 cut(s)	325, 630, 699, 976, 1165
NlaIII	CATG	6 cut(s)	88, 259, 428, 644, 983, 1036
NlaIV	GGNNCC	2 cut(s)	1042, 1080
NspV	TTCGAA	1 cut(s)	393
PagI	TCATGA	1 cut(s)	979
PfeI	GAWTC	4 cut(s)	308, 390, 887, 1068
PflMI	CCANNNNNTGG	2 cut(s)	591, 641
PkrI	GCNGC	1 cut(s)	967
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
PpuMI	RGGWCCY	1 cut(s)	1040
PshBI	ATTAAT	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	1040
PspN4I	GGNNCC	2 cut(s)	1042, 1080
PspPI	GGNCC	4 cut(s)	594, 769, 1040, 1079
PspPPI	RGGWCCY	1 cut(s)	1040
PsuI	RGATCY	1 cut(s)	630
RsaI	GTAC	2 cut(s)	105, 358
RsaNI	GTAC	2 cut(s)	104, 357
SaqAI	TTAA	5 cut(s)	143, 722, 764, 812, 897
SatI	GCNGC	1 cut(s)	966
Sau3AI	GATC	5 cut(s)	325, 630, 699, 976, 1165
Sau96I	GGNCC	4 cut(s)	594, 769, 1040, 1079
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	1 cut(s)	597
SduI	GDGCHC	1 cut(s)	1114
SfaNI	GCATC	4 cut(s)	226, 764, 835, 1160
SfuI	TTCGAA	1 cut(s)	393
SinI	GGWCC	2 cut(s)	769, 1040
SmlI	CTYRAG	1 cut(s)	896
SmoI	CTYRAG	1 cut(s)	896
SspI	AATATT	2 cut(s)	196, 1016
SspMI	CTAG	4 cut(s)	251, 380, 387, 606
StyD4I	CCNGG	1 cut(s)	595
StyI	CCWWGG	2 cut(s)	255, 296
TaaI	ACNGT	5 cut(s)	153, 356, 769, 790, 1057
TaiI	ACGT	2 cut(s)	216, 1162
TaqI	TCGA	3 cut(s)	393, 617, 938
TatI	WGTACW	1 cut(s)	103
TfiI	GAWTC	4 cut(s)	308, 390, 887, 1068
Tru1I	TTAA	5 cut(s)	143, 722, 764, 812, 897
Tru9I	TTAA	5 cut(s)	143, 722, 764, 812, 897
TscAI	CASTG	1 cut(s)	748
TseI	GCWGC	1 cut(s)	965
TspDTI	ATGAA	8 cut(s)	20, 77, 321, 413, 629, 942, 996, 1126
TspRI	CASTG	1 cut(s)	748
Van91I	CCANNNNNTGG	2 cut(s)	591, 641
Vha464I	CTTAAG	1 cut(s)	896
VpaK11BI	GGWCC	2 cut(s)	769, 1040
VspI	ATTAAT	1 cut(s)	143
XapI	RAATTY	2 cut(s)	529, 748
XspI	CTAG	4 cut(s)	251, 380, 387, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.