Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0024981

Physical Location & Seq

Genomic Coordinates Reverse (-)

1000786 .. 1002557

Gene Structure 1772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGATGAGCGAAGGCTATGTTTGGCTATCCACTAATGGGATAACTAATAGCTTGCAGTTGATGAACTCCTCATCCATGAATTCCATGCAAGGTGTATTAGCCATGGCAATTGAAAAGGTTGGAACTACAAGTGTTGGCTTCCCAAGGACGAATGAACCCTTGAACTCAGCCGATCCTCAAAGTTTTGAGGTCTCCAAATACGGTACAAAAATTAGCCAAGCCTTGCTAGTTACTAGATTCGAAGGCATTGCTGGACATTTCAATCTTATTCATGAGCAACTTCAAGCAACAACTTTTCAGATAGTAAACATAAATGACGATGGAGCAAGAGCAATTGGATTTTGGACAACAAAAAATGGTCTTGAAAACAAATTGAATTTACAGCAAATAGAACCATACCTTCAACTTATTCTGAGACCTTACTCTGAACCGATTGTATGGCCCGGAGACTCTAGCTCTGTGCCGAAGGGATGGGAGATCCCAATTCATGACAAGAATTTGAGAATAGGTGTTCCTCTAAATGTTCAATTCAAAGAGTTCCTTACGATCATCAAAGATCCAAATACTAACACAACAGAAGTGAGAGGGTATGCCGTTGACGTCTTTAAGGCTGCAACAAAATTATTTCCTTACGATCTACCTTACGAGTTCATTCCTTTTGCCAAGCCTGATGGCACCGTACCAGCGCTGGCACTTACAGTGATTTGTTTCCTTACACATTGTACAGGTGAAAGAGTTATCAGTAACTTGGCAAGATTTGTGATGATCATATGGGTATTTGTTATGTTAATACTGACACAAAGTTACACTGCGAATTTGGCATCAGTATTAACGGTCCAACAATTACAACCAACTGTTACCAGTATAAGGGACATTTTAAGGAACGGGGAGAGTGTTGGCTACGCAACAGATGCTTATCTGTATGGTATCTTGAAACAGTTAGGTTTTGACGATTCCAAGCTTGAGGCTTCAGCACTATGGAAGGGTTTGATGAAGCTCTTTCGAGAGGAAGTAAAAATGGTGGAATTGCTGCCATCGTTGATGAAAAGCCTACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

352

Amino Acids

39.33

Weight (kDa)

6.14

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lig_chan	PF00060	233 - 295	4.6e-17	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024981)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385951
rosa_laevigata	RLG00000010198
rosa_roxburghii	Rroxscaffold_5G00333570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	603
AccB1I	GGYRCC	1 cut(s)	674
AclWI	GGATC	3 cut(s)	167, 472, 551
AcsI	RAATTY	4 cut(s)	79, 376, 496, 814
AcuI	CTGAAG	1 cut(s)	954
AcyI	GRCGYC	1 cut(s)	600
AfaI	GTAC	3 cut(s)	205, 681, 724
AfeI	AGCGCT	1 cut(s)	687
AfiI	CCNNNNNNNGG	2 cut(s)	36, 867
AloI	GAACNNNNNNTCC	2 cut(s)	56, 88
AluBI	AGCT	4 cut(s)	51, 456, 961, 997
AluI	AGCT	4 cut(s)	51, 456, 961, 997
Alw26I	GTCTC	3 cut(s)	196, 409, 441
AlwI	GGATC	3 cut(s)	167, 472, 551
Aor51HI	AGCGCT	1 cut(s)	687
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	2 cut(s)	611, 1030
ApoI	RAATTY	4 cut(s)	79, 376, 496, 814
AspLEI	GCGC	1 cut(s)	688
AspS9I	GGNCC	2 cut(s)	441, 835
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	740
AsuII	TTCGAA	1 cut(s)	240
AvaII	GGWCC	1 cut(s)	835
BanI	GGYRCC	1 cut(s)	674
BbvI	GCAGC	2 cut(s)	598, 1017
BccI	CCATC	4 cut(s)	314, 465, 665, 1042
BceAI	ACGGC	1 cut(s)	578
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BclI	TGATCA	1 cut(s)	765
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	3 cut(s)	196, 409, 441
BfaI	CTAG	3 cut(s)	227, 234, 453
BfoI	RGCGCY	1 cut(s)	689
BisI	GCNGC	2 cut(s)	612, 1031
BlsI	GCNGC	2 cut(s)	613, 1032
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	1 cut(s)	835
BmgT120I	GGNCC	2 cut(s)	441, 835
BmiI	GGNNCC	1 cut(s)	676
BmrFI	CCNGG	1 cut(s)	444
BmsI	GCATC	2 cut(s)	830, 901
Bpu14I	TTCGAA	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	983
BpuMI	CCSGG	1 cut(s)	444
BsaBI	GATNNNNATC	1 cut(s)	915
BsaHI	GRCGYC	1 cut(s)	600
BsaI	GGTCTC	2 cut(s)	196, 409
BsaJI	CCNNGG	2 cut(s)	102, 143
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 867
Bse1I	ACTGG	1 cut(s)	861
Bse3DI	GCAATG	1 cut(s)	246
Bse8I	GATNNNNATC	1 cut(s)	915
BseDI	CCNNGG	2 cut(s)	102, 143
BseGI	GGATG	2 cut(s)	71, 476
BseJI	GATNNNNATC	1 cut(s)	915
BseLI	CCNNNNNNNGG	2 cut(s)	36, 867
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	180, 404
BseNI	ACTGG	1 cut(s)	861
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	598, 1017
BshFI	GGCC	1 cut(s)	442
BshNI	GGYRCC	1 cut(s)	674
BsiSI	CCGG	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	884
BslI	CCNNNNNNNGG	2 cut(s)	36, 867
BsmAI	GTCTC	3 cut(s)	196, 409, 441
BsmFI	GGGAC	1 cut(s)	884
BsnI	GGCC	1 cut(s)	442
Bso31I	GGTCTC	2 cut(s)	196, 409
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	722
Bsp143I	GATC	6 cut(s)	172, 477, 546, 556, 634, 765
Bsp19I	CCATGG	1 cut(s)	102
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	2 cut(s)	179, 405
BspHI	TCATGA	2 cut(s)	271, 487
BspLI	GGNNCC	1 cut(s)	676
BspPI	GGATC	3 cut(s)	167, 472, 551
BspT104I	TTCGAA	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	674
BspTNI	GGTCTC	2 cut(s)	196, 409
BsrDI	GCAATG	1 cut(s)	246
BsrGI	TGTACA	1 cut(s)	722
BsrI	ACTGG	1 cut(s)	861
BssECI	CCNNGG	2 cut(s)	102, 143
BssMI	GATC	6 cut(s)	172, 477, 546, 556, 634, 765
BssNI	GRCGYC	1 cut(s)	600
BssT1I	CCWWGG	2 cut(s)	102, 143
Bst4CI	ACNGT	6 cut(s)	203, 679, 700, 835, 856, 939
BstACI	GRCGYC	1 cut(s)	600
BstAPI	GCANNNNNTGC	1 cut(s)	911
BstAUI	TGTACA	1 cut(s)	722
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	53, 690
BstDEI	CTNAG	2 cut(s)	166, 413
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	71, 476
BstH2I	RGCGCY	1 cut(s)	689
BstHHI	GCGC	1 cut(s)	688
BstKTI	GATC	6 cut(s)	175, 480, 549, 559, 637, 768
BstMAI	GTCTC	3 cut(s)	196, 409, 441
BstMBI	GATC	6 cut(s)	172, 477, 546, 556, 634, 765
BstMWI	GCNNNNNNNGC	2 cut(s)	818, 911
BstSCI	CCNGG	1 cut(s)	442
BstV1I	GCAGC	2 cut(s)	598, 1017
BstX2I	RGATCY	2 cut(s)	477, 556
BstYI	RGATCY	2 cut(s)	477, 556
BsuRI	GGCC	1 cut(s)	442
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	71, 476
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	2 cut(s)	705, 807
Cac8I	GCNNGC	2 cut(s)	53, 690
CciI	TCATGA	2 cut(s)	271, 487
CfoI	GCGC	1 cut(s)	688
Cfr13I	GGNCC	2 cut(s)	441, 835
Csp6I	GTAC	3 cut(s)	204, 680, 723
CviAII	CATG	5 cut(s)	76, 85, 103, 272, 488
CviQI	GTAC	3 cut(s)	204, 680, 723
DdeI	CTNAG	2 cut(s)	166, 413
DpnI	GATC	6 cut(s)	174, 479, 548, 558, 636, 767
DpnII	GATC	6 cut(s)	172, 477, 546, 556, 634, 765
Eco130I	CCWWGG	2 cut(s)	102, 143
Eco31I	GGTCTC	2 cut(s)	196, 409
Eco47I	GGWCC	1 cut(s)	835
Eco47III	AGCGCT	1 cut(s)	687
Eco57I	CTGAAG	1 cut(s)	954
EcoRI	GAATTC	1 cut(s)	79
EcoT14I	CCWWGG	2 cut(s)	102, 143
ErhI	CCWWGG	2 cut(s)	102, 143
FaeI	CATG	5 cut(s)	79, 88, 106, 275, 491
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FaqI	GGGAC	1 cut(s)	884
FatI	CATG	5 cut(s)	75, 84, 102, 271, 487
FauNDI	CATATG	1 cut(s)	770
FbaI	TGATCA	1 cut(s)	765
Fnu4HI	GCNGC	2 cut(s)	612, 1031
FokI	GGATG	2 cut(s)	58, 483
Fsp4HI	GCNGC	2 cut(s)	612, 1031
FspBI	CTAG	3 cut(s)	227, 234, 453
GlaI	GCGC	1 cut(s)	687
GluI	GCNGC	2 cut(s)	612, 1031
HaeII	RGCGCY	1 cut(s)	689
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	1 cut(s)	444
HhaI	GCGC	1 cut(s)	688
Hin1I	GRCGYC	1 cut(s)	600
Hin1II	CATG	5 cut(s)	79, 88, 106, 275, 491
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HindIII	AAGCTT	1 cut(s)	959
HinfI	GANTC	3 cut(s)	237, 449, 953
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	1 cut(s)	740
Hpy166II	GTNNAC	2 cut(s)	307, 598
Hpy188I	TCNGA	3 cut(s)	300, 414, 427
Hpy188III	TCNNGA	5 cut(s)	272, 362, 488, 931, 1004
Hpy8I	GTNNAC	2 cut(s)	307, 598
HpyAV	CCTTC	5 cut(s)	5, 236, 410, 460, 976
HpyCH4III	ACNGT	6 cut(s)	203, 679, 700, 835, 856, 939
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	3 cut(s)	55, 88, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	818, 911
HpyF3I	CTNAG	2 cut(s)	166, 413
HpySE526I	ACGT	1 cut(s)	600
Hsp92I	GRCGYC	1 cut(s)	600
Hsp92II	CATG	5 cut(s)	79, 88, 106, 275, 491
HspAI	GCGC	1 cut(s)	686
Ksp22I	TGATCA	1 cut(s)	765
Kzo9I	GATC	6 cut(s)	172, 477, 546, 556, 634, 765
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	7 cut(s)	237, 457, 674, 681, 696, 711, 874
Lsp1109I	GCAGC	2 cut(s)	598, 1017
LweI	GCATC	2 cut(s)	830, 901
MaeI	CTAG	3 cut(s)	227, 234, 453
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	4 cut(s)	229, 743, 803, 856
MalI	GATC	6 cut(s)	174, 479, 548, 558, 636, 767
MboI	GATC	6 cut(s)	172, 477, 546, 556, 634, 765
MfeI	CAATTG	2 cut(s)	108, 333
MflI	RGATCY	2 cut(s)	477, 556
MlyI	GAGTC	1 cut(s)	443
MmeI	TCCRAC	2 cut(s)	100, 862
MnlI	CCTC	7 cut(s)	79, 181, 186, 525, 578, 958, 1000
MseI	TTAA	4 cut(s)	606, 788, 830, 878
MspI	CCGG	1 cut(s)	444
MspR9I	CCNGG	1 cut(s)	444
MunI	CAATTG	2 cut(s)	108, 333
MwoI	GCNNNNNNNGC	2 cut(s)	818, 911
NciI	CCSGG	1 cut(s)	444
NcoI	CCATGG	1 cut(s)	102
NdeI	CATATG	1 cut(s)	770
NdeII	GATC	6 cut(s)	172, 477, 546, 556, 634, 765
NlaIII	CATG	5 cut(s)	79, 88, 106, 275, 491
NlaIV	GGNNCC	1 cut(s)	676
NspV	TTCGAA	1 cut(s)	240
PagI	TCATGA	2 cut(s)	271, 487
PfeI	GAWTC	2 cut(s)	237, 953
PkrI	GCNGC	2 cut(s)	613, 1032
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PspN4I	GGNNCC	1 cut(s)	676
PspPI	GGNCC	2 cut(s)	441, 835
PsuI	RGATCY	2 cut(s)	477, 556
RsaI	GTAC	3 cut(s)	205, 681, 724
RsaNI	GTAC	3 cut(s)	204, 680, 723
SaqAI	TTAA	4 cut(s)	606, 788, 830, 878
SatI	GCNGC	2 cut(s)	612, 1031
Sau3AI	GATC	6 cut(s)	172, 477, 546, 556, 634, 765
Sau96I	GGNCC	2 cut(s)	441, 835
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	444
SfaNI	GCATC	2 cut(s)	830, 901
SfuI	TTCGAA	1 cut(s)	240
SinI	GGWCC	1 cut(s)	835
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
SspMI	CTAG	3 cut(s)	227, 234, 453
StyD4I	CCNGG	1 cut(s)	442
StyI	CCWWGG	2 cut(s)	102, 143
TaaI	ACNGT	6 cut(s)	203, 679, 700, 835, 856, 939
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	2 cut(s)	240, 1003
TatI	WGTACW	1 cut(s)	722
TfiI	GAWTC	2 cut(s)	237, 953
Tru1I	TTAA	4 cut(s)	606, 788, 830, 878
Tru9I	TTAA	4 cut(s)	606, 788, 830, 878
TscAI	CASTG	2 cut(s)	705, 814
TseI	GCWGC	2 cut(s)	611, 1030
TspDTI	ATGAA	8 cut(s)	77, 92, 168, 260, 476, 640, 1007, 1058
TspRI	CASTG	2 cut(s)	705, 814
VpaK11BI	GGWCC	1 cut(s)	835
XapI	RAATTY	4 cut(s)	79, 376, 496, 814
XspI	CTAG	3 cut(s)	227, 234, 453
ZraI	GACGTC	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.