RchiOBHm_Chr4g0386461

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
1958409 .. 1958788
380 bp
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UTR
Exon/CDS
Intron
PRQ35982

Sequence Viewer

Length: 165 bp
ATGTCAGATGTACAGTTCAATATGTGGTCATGCTTGGTCTTCTTAGTCTGCAATGTAGCAACAAGCTCTATCAATTGTACTTGGGTGAGAGAGCACGAATTGTCTCCAATATTGTCTGCTGCTACCATACTGTGTTGTTACTTGTTCACTTGTGCAGACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.06

Weight (kDa)

4.31

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024800)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 12, 79
AgsI TTSAA 1 cut(s) 19
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 108
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 31
Bse3DI GCAATG 1 cut(s) 58
BseMI GCAATG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 96
Bsp1407I TGTACA 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 10
Bst4CI ACNGT 2 cut(s) 15, 132
BstAUI TGTACA 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 31
Csp6I GTAC 2 cut(s) 11, 78
CviAII CATG 1 cut(s) 30
CviJI RGCY 1 cut(s) 66
CviKI_1 RGCY 1 cut(s) 66
CviQI GTAC 2 cut(s) 11, 78
DdeI CTNAG 1 cut(s) 43
FaeI CATG 1 cut(s) 33
FaiI YATR 3 cut(s) 23, 31, 128
FatI CATG 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
FspEI CC 6 cut(s) 10, 20, 67, 68, 120, 139
GluI GCNGC 1 cut(s) 120
Hin1II CATG 1 cut(s) 33
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 7
Hpy8I GTNNAC 1 cut(s) 147
HpyCH4III ACNGT 2 cut(s) 15, 132
HpyCH4V TGCA 2 cut(s) 51, 155
HpyF3I CTNAG 1 cut(s) 43
Hsp92II CATG 1 cut(s) 33
Lsp1109I GCAGC 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 137
MboII GAAGA 1 cut(s) 31
MfeI CAATTG 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 2 cut(s) 73, 98
MunI CAATTG 1 cut(s) 73
NlaIII CATG 1 cut(s) 33
PkrI GCNGC 1 cut(s) 121
RsaI GTAC 2 cut(s) 12, 79
RsaNI GTAC 2 cut(s) 11, 78
SatI GCNGC 1 cut(s) 120
SduI GDGCHC 1 cut(s) 96
SetI ASST 1 cut(s) 68
SgeI CNNG 6 cut(s) 42, 46, 75, 93, 107, 154
Sse9I AATT 2 cut(s) 73, 98
SspI AATATT 1 cut(s) 111
TaaI ACNGT 2 cut(s) 15, 132
TasI AATT 2 cut(s) 73, 98
TatI WGTACW 2 cut(s) 10, 77
TseI GCWGC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.