RchiOBHm_Chr4g0391011

Domain of unknown function (DUF4602)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
6256272 .. 6259595
3324 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36392

Sequence Viewer

Length: 153 bp
ATGCATAAGAACAAGGGAGGTGACAGAGGGCGACAAATGGGTAGGAAGAACCAGAAGCCGGAAACCAAGGACCAAGAATTGGACTCCAACGACCTAAGAATGGACATGAGGGAGATTTTCAAGCGTATTGAGCTCTTGGGTACTATGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

50

Amino Acids

5.93

Weight (kDa)

9.69

Isoelectric Point (pI)

56.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024955)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0391011
rosa_roxburghii Rroxscaffold_2G00131540
rosa_samantha Rh4BG131500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 79
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 3 cut(s) 58, 79, 100
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 32
AvaII GGWCC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 66
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 79, 100
BseDI CCNNGG 1 cut(s) 66
BseLI CCNNNNNNNGG 3 cut(s) 58, 79, 100
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 3 cut(s) 58, 79, 100
Bsp1286I GDGCHC 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 95
BstMWI GCNNNNNNNGC 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 141
CviAII CATG 1 cut(s) 106
CviJI RGCY 2 cut(s) 58, 133
CviKI_1 RGCY 2 cut(s) 58, 133
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 1 cut(s) 109
FaiI YATR 3 cut(s) 6, 107, 146
FatI CATG 1 cut(s) 105
FriOI GRGCYC 1 cut(s) 135
HapII CCGG 1 cut(s) 59
Hin1II CATG 1 cut(s) 109
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 1 cut(s) 109
LpnPI CCDG 2 cut(s) 65, 72
MaeIII GTNAC 1 cut(s) 20
MboII GAAGA 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 1 cut(s) 77
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 3 cut(s) 11, 20, 102
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 130
NlaIII CATG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 6
PflMI CCANNNNNTGG 1 cut(s) 79
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 70
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SacI GAGCTC 1 cut(s) 135
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 135
SetI ASST 3 cut(s) 22, 96, 135
SgeI CNNG 8 cut(s) 25, 64, 71, 79, 86, 118, 133, 148
SinI GGWCC 1 cut(s) 70
Sse9I AATT 1 cut(s) 77
SstI GAGCTC 1 cut(s) 135
StyI CCWWGG 1 cut(s) 66
TasI AATT 1 cut(s) 77
TseFI GTSAC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 70
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.