RchiOBHm_Chr4g0399241

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
16408401 .. 16412642
4242 bp
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UTR
Exon/CDS
Intron
PRQ37137

Sequence Viewer

Length: 171 bp
ATGGAAAGAGAACAATTTCCCTCAACACAATGGTTTCACTTCCAATTCAGTGACCCCATCAGAGGACAACAGCATAGCATGGAGCACGGTAGAGAACTAGAGATACTAGAGACCAGCTCGAGGGAGAGGGTTGAGATTGAGCAAGTCTCAAATCTTGATTTTGAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.81

Weight (kDa)

4.68

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019871)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 62, 120
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 1 cut(s) 117
AluI AGCT 1 cut(s) 117
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 2 cut(s) 104, 151
Ama87I CYCGRG 1 cut(s) 118
Asp700I GAANNNNTTC 1 cut(s) 15
AvaI CYCGRG 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 87
BccI CCATC 1 cut(s) 65
BcoDI GTCTC 2 cut(s) 104, 151
BfaI CTAG 2 cut(s) 98, 107
BmeT110I CYCGRG 1 cut(s) 118
BplI GAGNNNNNCTC 4 cut(s) 101, 133, 131, 163
BsaI GGTCTC 1 cut(s) 104
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 120
BseLI CCNNNNNNNGG 2 cut(s) 62, 120
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 62, 120
BsmAI GTCTC 2 cut(s) 104, 151
Bso31I GGTCTC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 89
BstMAI GTCTC 2 cut(s) 104, 151
BtsIMutI CAGTG 1 cut(s) 55
CviAII CATG 1 cut(s) 79
CviJI RGCY 1 cut(s) 117
CviKI_1 RGCY 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 118
FaeI CATG 1 cut(s) 82
FaiI YATR 3 cut(s) 75, 80, 169
FatI CATG 1 cut(s) 78
FspBI CTAG 2 cut(s) 98, 107
Hin1II CATG 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 89
Hsp92II CATG 1 cut(s) 82
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 1 cut(s) 127
MaeI CTAG 2 cut(s) 98, 107
MaeIII GTNAC 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 2 cut(s) 14, 44
MnlI CCTC 4 cut(s) 31, 56, 114, 120
MroXI GAANNNNTTC 1 cut(s) 15
NlaIII CATG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 50
PaeR7I CTCGAG 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 15
PspXI VCTCGAGB 1 cut(s) 118
PsrI GAACNNNNNNTAC 2 cut(s) 87, 119
SduI GDGCHC 1 cut(s) 87
SetI ASST 1 cut(s) 119
Sfr274I CTCGAG 1 cut(s) 118
SgeI CNNG 9 cut(s) 91, 98, 110, 119, 126, 130, 132, 155, 167
SlaI CTCGAG 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 2 cut(s) 14, 44
SspMI CTAG 2 cut(s) 98, 107
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 119
TasI AATT 2 cut(s) 14, 44
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 50
TspRI CASTG 1 cut(s) 55
XhoI CTCGAG 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 15
XspI CTAG 2 cut(s) 98, 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.