RLG00000031476

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
5510133 .. 5512640
2508 bp
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UTR
Exon/CDS
Intron
RLM00000031476

Sequence Viewer

Length: 474 bp
ATGATTCCTCCGCCACCGCCGTCCTCGTCTACTCTGGTCGAGCCTCCGTATGGACAACGGTTGGTGTTTGCTGACCGGTGGGATCTGCAGTGCTGCTCTCCGACTACGGGGCAGATCTTCTATCTCCGGCTCTCTAACTCTGGTTCTCTATATCTCTCCGAAACCCCCAAGGGTTGCAATATGGCTAGGAGATCTTGGTTGATTTCATCAAGTGATGAGGGGAAGCCTAGTGCGCTTTGGATCGGCAGTAAGGTTGAAGTTGGAGTGGTAGCGGATTTGATGGAAAGAGACCAATTTCCCTCAACACAATGGTTTCACTTCCAATTCAGTGACCCCATCAGAGGACAACAGCATAGCATTGAGCAAGGTAGAGAACTAGAGACCAGCTCGAAGGAGAGGGTCGAGATTGAGCAGGTCTCAAATTTTGATTTTGATGTTGTAAAAAAGGCTTCATTCATCTGTGGCAAGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.71

Weight (kDa)

5.41

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019871)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 403
AccI GTMKAC 1 cut(s) 29
AciI CCGC 3 cut(s) 11, 17, 272
AclWI GGATC 2 cut(s) 90, 248
AcsI RAATTY 1 cut(s) 421
AfiI CCNNNNNNNGG 3 cut(s) 50, 107, 341
AgeI ACCGGT 1 cut(s) 75
AgsI TTSAA 1 cut(s) 257
AluBI AGCT 2 cut(s) 387, 469
AluI AGCT 2 cut(s) 387, 469
Alw26I GTCTC 3 cut(s) 282, 374, 421
AlwI GGATC 2 cut(s) 90, 248
ApeKI GCWGC 1 cut(s) 93
ApoI RAATTY 1 cut(s) 421
AsiGI ACCGGT 1 cut(s) 75
AspLEI GCGC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 80
BccI CCATC 2 cut(s) 274, 344
BceAI ACGGC 1 cut(s) 4
BcoDI GTCTC 3 cut(s) 282, 374, 421
BfaI CTAG 3 cut(s) 186, 228, 377
BfmI CTRYAG 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 403
BglII AGATCT 2 cut(s) 114, 191
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
BplI GAGNNNNNCTC 4 cut(s) 371, 403, 401, 433
BsaI GGTCTC 3 cut(s) 282, 374, 421
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 75
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 107, 341
Bse118I RCCGGY 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 168
BseLI CCNNNNNNNGG 3 cut(s) 50, 107, 341
BseXI GCAGC 1 cut(s) 80
BshTI ACCGGT 1 cut(s) 75
BsiSI CCGG 2 cut(s) 76, 127
BslI CCNNNNNNNGG 3 cut(s) 50, 107, 341
BsmAI GTCTC 3 cut(s) 282, 374, 421
Bso31I GGTCTC 3 cut(s) 282, 374, 421
Bsp143I GATC 4 cut(s) 82, 114, 191, 240
BspACI CCGC 3 cut(s) 11, 17, 272
BspMAI CTGCAG 1 cut(s) 90
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 2 cut(s) 90, 248
BspTNI GGTCTC 3 cut(s) 282, 374, 421
BsrFI RCCGGY 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 4 cut(s) 82, 114, 191, 240
BssT1I CCWWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 467
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 4 cut(s) 85, 117, 194, 243
BstMAI GTCTC 3 cut(s) 282, 374, 421
BstMBI GATC 4 cut(s) 82, 114, 191, 240
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstSFI CTRYAG 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 80
BstX2I RGATCY 3 cut(s) 82, 114, 191
BstYI RGATCY 3 cut(s) 82, 114, 191
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 2 cut(s) 95, 334
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 467
CfoI GCGC 1 cut(s) 235
Cfr10I RCCGGY 1 cut(s) 75
CspAI ACCGGT 1 cut(s) 75
CviJI RGCY 7 cut(s) 43, 130, 185, 226, 387, 449, 469
CviKI_1 RGCY 7 cut(s) 43, 130, 185, 226, 387, 449, 469
DpnI GATC 4 cut(s) 84, 116, 193, 242
DpnII GATC 4 cut(s) 82, 114, 191, 240
Eco130I CCWWGG 1 cut(s) 168
Eco31I GGTCTC 3 cut(s) 282, 374, 421
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaiI YATR 4 cut(s) 51, 151, 182, 354
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 94
FspBI CTAG 3 cut(s) 186, 228, 377
GlaI GCGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 94
HapII CCGG 2 cut(s) 76, 127
HhaI GCGC 1 cut(s) 235
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 76, 127
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 3 cut(s) 102, 160, 341
Hpy188III TCNNGA 1 cut(s) 403
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 88, 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HspAI GCGC 1 cut(s) 233
Kzo9I GATC 4 cut(s) 82, 114, 191, 240
LpnPI CCDG 6 cut(s) 20, 89, 126, 140, 397, 398
Lsp1109I GCAGC 1 cut(s) 80
MaeI CTAG 3 cut(s) 186, 228, 377
MaeIII GTNAC 1 cut(s) 329
MalI GATC 4 cut(s) 84, 116, 193, 242
MboI GATC 4 cut(s) 82, 114, 191, 240
MboII GAAGA 1 cut(s) 109
MflI RGATCY 3 cut(s) 82, 114, 191
MluCI AATT 3 cut(s) 293, 323, 421
MmeI TCCRAC 2 cut(s) 125, 241
MnlI CCTC 7 cut(s) 18, 34, 54, 211, 310, 335, 390
MspI CCGG 2 cut(s) 76, 127
MwoI GCNNNNNNNGC 1 cut(s) 232
NdeII GATC 4 cut(s) 82, 114, 191, 240
NmuCI GTSAC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 4
PinAI ACCGGT 1 cut(s) 75
PkrI GCNGC 1 cut(s) 95
PstI CTGCAG 1 cut(s) 90
PsuI RGATCY 3 cut(s) 82, 114, 191
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 4 cut(s) 82, 114, 191, 240
SetI ASST 5 cut(s) 255, 370, 389, 417, 471
SfcI CTRYAG 1 cut(s) 86
Sse9I AATT 3 cut(s) 293, 323, 421
SsiI CCGC 3 cut(s) 11, 17, 272
SspMI CTAG 3 cut(s) 186, 228, 377
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 60
TaqI TCGA 3 cut(s) 39, 389, 402
TasI AATT 3 cut(s) 293, 323, 421
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 2 cut(s) 95, 334
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 1 cut(s) 93
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 3 cut(s) 195, 441, 445
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 2 cut(s) 95, 334
XapI RAATTY 1 cut(s) 421
XmiI GTMKAC 1 cut(s) 29
XspI CTAG 3 cut(s) 186, 228, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.