RLG00000029345

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0019871
Physical Location & Seq
Reverse (-)
36836442 .. 36837693
1252 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029345

Sequence Viewer

Length: 363 bp
ATGGACGACGGTTGGTGTTTGCTGACCGGCGGGATCTGCTGTGCTGCTCTGCGACGACGGGGCAGATCTACTATCTCTGGGACCTCTGTAGATTGGATTAGGCTAGGAGATCTTGGTCAATTTCATCAAGTGATCAGGGGAAGTCTAGTACGCTTTGGATCGGCAGTAAGTGACCCCATCAGAGGACAACAGCATAGCATGGAGCACGGTGGAGAACTAGAGATACTAGAGACCAGCTTGAGGGAGAGGGTCGAGATTGAGCAAGTCTCAAATCTTTATTTTGAAGTTATAAAAAAGGCTATTGCATCTGGCTTCATTCATCTGTGGCAAGCTCTAACCAAGCAGAAATATATGGTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.47

Weight (kDa)

7.78

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019871)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0135541 RchiOBHm_Chr4g0399241 RchiOBHm_Chr5g0080141
rosa_laevigata RLG00000029345 RLG00000031476
rosa_samantha Rh1AG213700 Rh1CG198300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 290
AciI CCGC 1 cut(s) 30
AclWI GGATC 2 cut(s) 41, 166
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 2 cut(s) 182, 240
AgsI TTSAA 1 cut(s) 284
AluBI AGCT 2 cut(s) 237, 332
AluI AGCT 2 cut(s) 237, 332
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 2 cut(s) 224, 271
AlwI GGATC 2 cut(s) 41, 166
ApeKI GCWGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 81
AvaII GGWCC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 31
BccI CCATC 1 cut(s) 185
BclI TGATCA 1 cut(s) 132
BcoDI GTCTC 2 cut(s) 224, 271
BfaI CTAG 4 cut(s) 104, 146, 218, 227
BfmI CTRYAG 1 cut(s) 87
BglII AGATCT 2 cut(s) 65, 109
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 1 cut(s) 314
BplI GAGNNNNNCTC 2 cut(s) 251, 283
BpuEI CTTGAG 1 cut(s) 259
BsaI GGTCTC 1 cut(s) 224
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 240
Bse118I RCCGGY 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 182, 240
BseXI GCAGC 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 2 cut(s) 182, 240
BsmAI GTCTC 2 cut(s) 224, 271
BsmFI GGGAC 1 cut(s) 94
Bso31I GGTCTC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 5 cut(s) 33, 65, 109, 132, 158
BspACI CCGC 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 2 cut(s) 41, 166
BspTNI GGTCTC 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssMI GATC 5 cut(s) 33, 65, 109, 132, 158
Bst4CI ACNGT 2 cut(s) 11, 209
BstC8I GCNNGC 1 cut(s) 330
BstKTI GATC 5 cut(s) 36, 68, 112, 135, 161
BstMAI GTCTC 2 cut(s) 224, 271
BstMBI GATC 5 cut(s) 33, 65, 109, 132, 158
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 31
BstX2I RGATCY 3 cut(s) 33, 65, 109
BstYI RGATCY 3 cut(s) 33, 65, 109
Cac8I GCNNGC 1 cut(s) 330
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 81
Csp6I GTAC 1 cut(s) 149
CviAII CATG 1 cut(s) 199
CviJI RGCY 5 cut(s) 103, 237, 299, 312, 332
CviKI_1 RGCY 5 cut(s) 103, 237, 299, 312, 332
CviQI GTAC 1 cut(s) 149
DpnI GATC 5 cut(s) 35, 67, 111, 134, 160
DpnII GATC 5 cut(s) 33, 65, 109, 132, 158
Eco31I GGTCTC 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 81
FaeI CATG 1 cut(s) 202
FaiI YATR 6 cut(s) 195, 200, 290, 351, 353, 361
FaqI GGGAC 1 cut(s) 94
FatI CATG 1 cut(s) 198
FauI CCCGC 1 cut(s) 23
FbaI TGATCA 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 4 cut(s) 104, 146, 218, 227
GluI GCNGC 1 cut(s) 45
HapII CCGG 1 cut(s) 27
Hin1II CATG 1 cut(s) 202
HpaII CCGG 1 cut(s) 27
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 1 cut(s) 253
Hpy99I CGWCG 3 cut(s) 11, 57, 60
HpyCH4III ACNGT 2 cut(s) 11, 209
HpyCH4V TGCA 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
Hsp92II CATG 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 132
Kzo9I GATC 5 cut(s) 33, 65, 109, 132, 158
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 5 cut(s) 40, 63, 121, 247, 294
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 1 cut(s) 314
MaeI CTAG 4 cut(s) 104, 146, 218, 227
MaeIII GTNAC 1 cut(s) 170
MalI GATC 5 cut(s) 35, 67, 111, 134, 160
MboI GATC 5 cut(s) 33, 65, 109, 132, 158
MflI RGATCY 3 cut(s) 33, 65, 109
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 119
MnlI CCTC 4 cut(s) 94, 176, 234, 240
MspI CCGG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 36
NdeII GATC 5 cut(s) 33, 65, 109, 132, 158
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 46
PpuMI RGGWCCY 1 cut(s) 81
PsiI TTATAA 1 cut(s) 290
Psp5II RGGWCCY 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 81
PspPPI RGGWCCY 1 cut(s) 81
PsrI GAACNNNNNNTAC 2 cut(s) 207, 239
PsuI RGATCY 3 cut(s) 33, 65, 109
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 5 cut(s) 33, 65, 109, 132, 158
Sau96I GGNCC 1 cut(s) 81
SduI GDGCHC 1 cut(s) 207
SetI ASST 3 cut(s) 86, 239, 334
SfaNI GCATC 1 cut(s) 314
SfcI CTRYAG 1 cut(s) 87
SinI GGWCC 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 1 cut(s) 119
SsiI CCGC 1 cut(s) 30
SspMI CTAG 4 cut(s) 104, 146, 218, 227
TaaI ACNGT 2 cut(s) 11, 209
TaqI TCGA 1 cut(s) 252
TasI AATT 1 cut(s) 119
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 3 cut(s) 113, 304, 308
VpaK11BI GGWCC 1 cut(s) 81
XspI CTAG 4 cut(s) 104, 146, 218, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.