Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019922

Physical Location & Seq

Genomic Coordinates Reverse (-)

17715693 .. 17716114

Gene Structure 422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37220

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGAGTCCCATTTCAGGCTGTGATAGTTCTATTCTAATAAATTCCGGCAAGAATCCTGAGAAGTCAGCATTGGCACATGCAGGAGTGAAGGGTTTTGATGTGATCGAGTCGGCGAAATCAAGACTGGAAGTGGTTTGCCAAGGACTCATTTCCTATTCTGACATTATTGCTCTGGCTGCACGGGATGCTATTTCTTTGGTAAGTAGAATTATAGCAATACAACTTTATTATTCCATTGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

81

Amino Acids

8.58

Weight (kDa)

6.53

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	5 - 67	3.3e-16	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019922)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400151
rosa_multiflora	Rmu_co8395991.1_g000001 Rmu_sc0000037.1_g000018 Rmu_sc0035964.1_g000002
rosa_samantha	Rh4AG098600 Rh4CG108100 Rh4DG093200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	14
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	163
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
BmsI	GCATC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	139
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 185
BstNSI	RCATGY	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	190
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	2 cut(s)	18, 176
CviKI_1	RGCY	2 cut(s)	18, 176
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	1 cut(s)	80
FaiI	YATR	2 cut(s)	78, 212
FatI	CATG	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	177
HapII	CCGG	1 cut(s)	45
Hin1II	CATG	1 cut(s)	80
HinfI	GANTC	4 cut(s)	4, 52, 107, 144
HpaII	CCGG	1 cut(s)	45
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	2 cut(s)	56, 120
HpyAV	CCTTC	1 cut(s)	82
HpyCH4V	TGCA	2 cut(s)	80, 179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 185
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	102
LpnPI	CCDG	5 cut(s)	58, 66, 69, 110, 158
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	175
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MluCI	AATT	2 cut(s)	40, 207
MlyI	GAGTC	3 cut(s)	13, 116, 138
MspI	CCGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	176, 185
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	1 cut(s)	80
NspI	RCATGY	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	3 cut(s)	12, 115, 138
PpsI	GAGTC	3 cut(s)	12, 115, 138
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	102
SchI	GAGTC	3 cut(s)	13, 116, 138
SfaNI	GCATC	1 cut(s)	175
Sse9I	AATT	2 cut(s)	40, 207
StyI	CCWWGG	1 cut(s)	139
TaqI	TCGA	1 cut(s)	105
TasI	AATT	2 cut(s)	40, 207
TfiI	GAWTC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.