Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0019922

Physical Location & Seq

Genomic Coordinates Reverse (-)

20167692 .. 20168192

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG108100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGTCAGAGAGGCAGTCTGGACCAATCCTCAGACCGCTTCGATTCTCCTCCGACTGCAATTTCATAACTGCTTTGTGGATGGCTGCGATGGTTCTATTCTAGTAGATTCTAGCAAGAATCTCGAGAAGTCAGCATTCGCACATGCAAGAGTGAAGGGTTTTGATGTGATCGAGTCGGCGAAATCAAGACTGGAGGTGGTCTGCCAAGGACTCATTTCCTATTCTGACATTGTTGCTTTGCTCGGGATGCTATTTTATTGGGAAGTAGAATTACAACAATACAGCGTTATTATTCTATTGACAAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

103

Amino Acids

11.57

Weight (kDa)

5.0

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	2 - 82	1.9e-20	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019922)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0400151
rosa_multiflora	Rmu_co8395991.1_g000001 Rmu_sc0000037.1_g000018 Rmu_sc0035964.1_g000002
rosa_samantha	Rh4AG098600 Rh4CG108100 Rh4DG093200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	36
Ama87I	CYCGRG	2 cut(s)	122, 242
ApeKI	GCWGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	21
AvaI	CYCGRG	2 cut(s)	122, 242
AvaII	GGWCC	1 cut(s)	21
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	2 cut(s)	74, 83
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BfaI	CTAG	2 cut(s)	101, 111
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	21
BmeT110I	CYCGRG	2 cut(s)	122, 242
BmgT120I	GGNCC	1 cut(s)	21
BmsI	GCATC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	2 cut(s)	85, 252
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	71
BsiHKCI	CYCGRG	2 cut(s)	122, 242
BsmI	GAATGC	1 cut(s)	134
BsoBI	CYCGRG	2 cut(s)	122, 242
Bsp143I	GATC	1 cut(s)	168
BspACI	CCGC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	85, 252
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNSI	RCATGY	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	71
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	85, 252
Cfr13I	GGNCC	1 cut(s)	21
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	1 cut(s)	84
CviKI_1	RGCY	1 cut(s)	84
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	21
Eco88I	CYCGRG	2 cut(s)	122, 242
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	1 cut(s)	146
FaiI	YATR	2 cut(s)	66, 144
FatI	CATG	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	2 cut(s)	92, 259
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	2 cut(s)	101, 111
GluI	GCNGC	1 cut(s)	85
GsuI	CTGGAG	1 cut(s)	212
Hin1II	CATG	1 cut(s)	146
HinfI	GANTC	5 cut(s)	43, 107, 118, 173, 210
Hpy188I	TCNGA	4 cut(s)	8, 33, 53, 226
Hpy188III	TCNNGA	5 cut(s)	19, 122, 124, 186, 244
HpyAV	CCTTC	1 cut(s)	148
HpyCH4V	TGCA	2 cut(s)	58, 146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	168
LpnPI	CCDG	2 cut(s)	4, 176
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	2 cut(s)	101, 111
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MluCI	AATT	2 cut(s)	59, 269
MlyI	GAGTC	2 cut(s)	182, 204
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	4 cut(s)	4, 39, 59, 187
Mva1269I	GAATGC	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	247
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	1 cut(s)	146
NspI	RCATGY	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	122
PctI	GAATGC	1 cut(s)	134
PfeI	GAWTC	3 cut(s)	43, 107, 118
PkrI	GCNGC	1 cut(s)	86
PleI	GAGTC	2 cut(s)	181, 204
PpsI	GAGTC	2 cut(s)	181, 204
PspPI	GGNCC	1 cut(s)	21
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	1 cut(s)	21
SchI	GAGTC	2 cut(s)	182, 204
SetI	ASST	1 cut(s)	198
SfaNI	GCATC	1 cut(s)	237
Sfr274I	CTCGAG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	21
SlaI	CTCGAG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	59, 269
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	2 cut(s)	101, 111
StyI	CCWWGG	1 cut(s)	205
TaqI	TCGA	3 cut(s)	41, 123, 171
TasI	AATT	2 cut(s)	59, 269
TfiI	GAWTC	3 cut(s)	43, 107, 118
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	21
XceI	RCATGY	1 cut(s)	146
XhoI	CTCGAG	1 cut(s)	122
XspI	CTAG	2 cut(s)	101, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.