Rh4DG093200

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0019922
Physical Location & Seq
Reverse (-)
14075691 .. 14076191
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG093200.1

Sequence Viewer

Length: 312 bp
ATGGTCAGAGATGCAGTCTGGACCAATCCTCGGACCGCTTCGATTCTCCTCCGACTGCAATTTCATAACTGCTTTGTGGATGGCTGCGATGGTTCTATTCTAGTAGATTCCGGCAAGAATCCCGAGAAGTCAGCACTTGCACATGCAGGAGTGAAGGGTTTTGATGTGATCGAGTCGGCGAAATCAAGACTGGAGGTGGTCTGCCAAGGACTCATTTCCTATTCTGACATTGTTGCTCTGGTTGCGCGGGATGCTATTTCATTGGTAAGTAGAATTACAGCAATACAGCTTTATTATTCCATTGACAAATGA

Protein Analysis

103

Amino Acids

11.21

Weight (kDa)

6.7

Isoelectric Point (pI)

25.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 2 - 89 2.9e-25 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019922)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0400151
rosa_multiflora Rmu_co8395991.1_g000001 Rmu_sc0000037.1_g000018 Rmu_sc0035964.1_g000002
rosa_samantha Rh4AG098600 Rh4CG108100 Rh4DG093200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 247
AciI CCGC 2 cut(s) 36, 247
AfiI CCNNNNNNNGG 1 cut(s) 30
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
Ama87I CYCGRG 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 2 cut(s) 21, 33
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 2 cut(s) 21, 33
BbvI GCAGC 1 cut(s) 71
BccI CCATC 2 cut(s) 74, 83
BfaI CTAG 1 cut(s) 101
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme18I GGWCC 2 cut(s) 21, 33
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 21, 33
BmsI GCATC 1 cut(s) 241
BpmI CTGGAG 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 29, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 29, 205
BseGI GGATG 2 cut(s) 85, 256
BseLI CCNNNNNNNGG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 122
Bsp143I GATC 1 cut(s) 168
BspACI CCGC 2 cut(s) 36, 247
BspFNI CGCG 1 cut(s) 247
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 29, 205
BssMI GATC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 205
BstF5I GGATG 2 cut(s) 85, 256
BstFNI CGCG 1 cut(s) 247
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 1 cut(s) 171
BstMBI GATC 1 cut(s) 168
BstMWI GCNNNNNNNGC 2 cut(s) 242, 251
BstNSI RCATGY 1 cut(s) 146
BstUI CGCG 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 2 cut(s) 85, 256
CfoI GCGC 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 21, 33
CpoI CGGWCCG 1 cut(s) 33
CspI CGGWCCG 1 cut(s) 33
CviAII CATG 1 cut(s) 143
CviJI RGCY 2 cut(s) 84, 289
CviKI_1 RGCY 2 cut(s) 84, 289
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 205
Eco47I GGWCC 2 cut(s) 21, 33
Eco88I CYCGRG 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 1 cut(s) 146
FaiI YATR 2 cut(s) 66, 144
FatI CATG 1 cut(s) 142
FauI CCCGC 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 2 cut(s) 92, 263
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 1 cut(s) 101
GlaI GCGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 212
HapII CCGG 1 cut(s) 111
HhaI GCGC 1 cut(s) 247
Hin1II CATG 1 cut(s) 146
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HinfI GANTC 5 cut(s) 43, 107, 118, 173, 210
HpaII CCGG 1 cut(s) 111
Hpy188I TCNGA 4 cut(s) 8, 33, 53, 226
Hpy188III TCNNGA 3 cut(s) 19, 122, 186
HpyAV CCTTC 1 cut(s) 148
HpyCH4V TGCA 4 cut(s) 14, 58, 140, 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 251
Hsp92II CATG 1 cut(s) 146
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 1 cut(s) 168
LpnPI CCDG 5 cut(s) 4, 124, 132, 176, 224
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 241
MaeI CTAG 1 cut(s) 101
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MluCI AATT 2 cut(s) 59, 273
MlyI GAGTC 2 cut(s) 182, 204
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 3 cut(s) 39, 59, 187
MspI CCGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 247
MwoI GCNNNNNNNGC 2 cut(s) 242, 251
NdeII GATC 1 cut(s) 168
NlaIII CATG 1 cut(s) 146
NspI RCATGY 1 cut(s) 146
PfeI GAWTC 3 cut(s) 43, 107, 118
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 2 cut(s) 181, 204
PpsI GAGTC 2 cut(s) 181, 204
PspPI GGNCC 2 cut(s) 21, 33
Rsr2I CGGWCCG 1 cut(s) 33
RsrII CGGWCCG 1 cut(s) 33
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 168
Sau96I GGNCC 2 cut(s) 21, 33
SchI GAGTC 2 cut(s) 182, 204
SetI ASST 2 cut(s) 198, 291
SfaNI GCATC 1 cut(s) 241
SinI GGWCC 2 cut(s) 21, 33
Sse9I AATT 2 cut(s) 59, 273
SsiI CCGC 2 cut(s) 36, 247
SspMI CTAG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 205
TaqI TCGA 2 cut(s) 41, 171
TasI AATT 2 cut(s) 59, 273
TfiI GAWTC 3 cut(s) 43, 107, 118
TseI GCWGC 1 cut(s) 84
TspDTI ATGAA 2 cut(s) 53, 249
VpaK11BI GGWCC 2 cut(s) 21, 33
XceI RCATGY 1 cut(s) 146
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.