Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024985

Physical Location & Seq

Genomic Coordinates Reverse (-)

19871934 .. 19874197

Gene Structure 2264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37357

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAGACTGATCTCCACCGCTCCTGGGTTCGAGTATGTGCCGAATCTAATCTCGTCGCTGCGGCGACGGCGAGGAGCGCCGAGGAGAGGAACAGTTGGTGATATTTCAGCTCATAATAGTGATAGCACTAGAGGAGGAAGAATGCGTAGAATCAATTCTATGGATGTGATGGAGAACTGGGCTGCTCATCAAAAGGAAAAGAAATTCTACATTGTCCTCCATGGCTTGATACGCGGTGAAAACATGGAGCTTGGTCGTGATTCTGATACAGGTGGCCAGGTCAAGTATGTTGTGGAACTTGCCAGGGCCTTGGGTTCAATGCCTGGAGTTTATCGCGTTGATTTACTAACAAGACAAGTTTCATCTCCAGATGTGGATTGGAGTTATGGGGAACCAACTGAAATGTTGAATCCAGTAAACTCTGAGAATCCACAAGAGGAGCTTGGGGAGAGTACTGGGGCTTATATAGTGCGTATACCATTTGGCCCAAAAGATAAATACGTTCCCAAAGAACTCCTTTGGCCACACATTCCTGAGTTTGTAGATGGAGCACTTAACCATATTATACAGTTGTCCAAAGCTCTTGGAGAGCAAATTGGAGGTTGTTTACACTTCTACTTTACACTTCTACTTTCTAAGATTCTAGATTTATCCGACTTTTCTGGCAATTTACACTTCTACCACATATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0008194 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0016020 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0035251 GO:0043062 GO:0044085 GO:0044464 GO:0045229 GO:0046524 GO:0046527 GO:0046903 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0071836 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

230

Amino Acids

25.92

Weight (kDa)

6.71

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024985)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401671 RchiOBHm_Chr7g0223581
rosa_multiflora	Rmu_sc0023565.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	475
AccII	CGCG	2 cut(s)	234, 336
AciI	CCGC	3 cut(s)	18, 61, 234
AcoI	YGGCCR	2 cut(s)	274, 521
AcsI	RAATTY	1 cut(s)	203
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	2 cut(s)	24, 86
AgsI	TTSAA	2 cut(s)	318, 409
AjnI	CCWGG	4 cut(s)	22, 276, 302, 322
AluBI	AGCT	4 cut(s)	110, 250, 442, 581
AluI	AGCT	4 cut(s)	110, 250, 442, 581
Alw21I	GWGCWC	1 cut(s)	553
AoxI	GGCC	4 cut(s)	274, 306, 484, 521
ApeKI	GCWGC	2 cut(s)	58, 182
ApoI	RAATTY	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	2 cut(s)	306, 485
AsuHPI	GGTGA	2 cut(s)	110, 248
BalI	TGGCCA	2 cut(s)	276, 523
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	2 cut(s)	45, 169
BccI	CCATC	2 cut(s)	163, 539
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	4 cut(s)	24, 278, 304, 324
BfaI	CTAG	2 cut(s)	129, 644
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	3 cut(s)	59, 62, 183
BlsI	GCNGC	3 cut(s)	60, 63, 184
BmcAI	AGTACT	1 cut(s)	454
Bme1390I	CCNGG	4 cut(s)	24, 278, 304, 324
BmgT120I	GGNCC	2 cut(s)	306, 485
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	4 cut(s)	24, 278, 304, 324
BmrI	ACTGGG	2 cut(s)	187, 465
BmuI	ACTGGG	2 cut(s)	187, 465
BpmI	CTGGAG	2 cut(s)	345, 351
BsaJI	CCNNGG	5 cut(s)	23, 80, 220, 303, 309
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 86
Bse1I	ACTGG	3 cut(s)	182, 413, 460
BseBI	CCWGG	4 cut(s)	24, 278, 304, 324
BseDI	CCNNGG	5 cut(s)	23, 80, 220, 303, 309
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	2 cut(s)	24, 86
BseMII	CTCAG	2 cut(s)	414, 525
BseNI	ACTGG	3 cut(s)	182, 413, 460
BseRI	GAGGAG	4 cut(s)	87, 97, 147, 452
BseXI	GCAGC	2 cut(s)	45, 169
Bsh1236I	CGCG	2 cut(s)	234, 336
BshFI	GGCC	4 cut(s)	276, 308, 486, 523
BsiHKAI	GWGCWC	1 cut(s)	553
BslI	CCNNNNNNNGG	2 cut(s)	24, 86
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	4 cut(s)	276, 308, 486, 523
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	1 cut(s)	9
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	3 cut(s)	18, 61, 234
BspANI	GGCC	4 cut(s)	276, 308, 486, 523
BspCNI	CTCAG	2 cut(s)	415, 526
BspFNI	CGCG	2 cut(s)	234, 336
BspLI	GGNNCC	1 cut(s)	393
BsrBI	CCGCTC	1 cut(s)	20
BsrI	ACTGG	3 cut(s)	182, 413, 460
BssECI	CCNNGG	5 cut(s)	23, 80, 220, 303, 309
BssMI	GATC	1 cut(s)	9
BssNAI	GTATAC	1 cut(s)	476
BssT1I	CCWWGG	2 cut(s)	220, 309
Bst1107I	GTATAC	1 cut(s)	476
Bst2UI	CCWGG	4 cut(s)	24, 278, 304, 324
Bst4CI	ACNGT	2 cut(s)	94, 570
BstDEI	CTNAG	3 cut(s)	423, 534, 636
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	2 cut(s)	234, 336
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 76, 231
BstNI	CCWGG	4 cut(s)	24, 278, 304, 324
BstSCI	CCNGG	4 cut(s)	22, 276, 302, 322
BstUI	CGCG	2 cut(s)	234, 336
BstV1I	GCAGC	2 cut(s)	45, 169
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstZ17I	GTATAC	1 cut(s)	476
BsuRI	GGCC	4 cut(s)	276, 308, 486, 523
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	169
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	306, 485
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	2 cut(s)	221, 244
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	3 cut(s)	423, 534, 636
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EaeI	YGGCCR	2 cut(s)	274, 521
Eco130I	CCWWGG	2 cut(s)	220, 309
EcoO109I	RGGNCCY	1 cut(s)	306
EcoRII	CCWGG	4 cut(s)	22, 276, 302, 322
EcoT14I	CCWWGG	2 cut(s)	220, 309
ErhI	CCWWGG	2 cut(s)	220, 309
FaeI	CATG	2 cut(s)	224, 247
FalI	AAGNNNNNCTT	4 cut(s)	426, 458, 501, 533
FatI	CATG	2 cut(s)	220, 243
FblI	GTMKAC	1 cut(s)	475
Fnu4HI	GCNGC	3 cut(s)	59, 62, 183
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	3 cut(s)	59, 62, 183
FspBI	CTAG	2 cut(s)	129, 644
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	3 cut(s)	59, 62, 183
GsuI	CTGGAG	2 cut(s)	345, 351
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	4 cut(s)	276, 308, 486, 523
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	2 cut(s)	224, 247
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	6 cut(s)	43, 150, 260, 409, 427, 640
HphI	GGTGA	2 cut(s)	110, 248
Hpy166II	GTNNAC	3 cut(s)	418, 476, 608
Hpy188I	TCNGA	3 cut(s)	265, 424, 655
Hpy188III	TCNNGA	4 cut(s)	257, 368, 533, 644
Hpy8I	GTNNAC	3 cut(s)	418, 476, 608
Hpy99I	CGWCG	2 cut(s)	58, 69
HpyCH4III	ACNGT	2 cut(s)	94, 570
HpyCH4IV	ACGT	1 cut(s)	501
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 76, 231
HpyF3I	CTNAG	3 cut(s)	423, 534, 636
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	2 cut(s)	224, 247
HspAI	GCGC	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	5 cut(s)	25, 74, 247, 439, 548
Lsp1109I	GCAGC	2 cut(s)	45, 169
MaeI	CTAG	2 cut(s)	129, 644
MaeII	ACGT	1 cut(s)	501
MalI	GATC	1 cut(s)	11
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	1 cut(s)	9
MboII	GAAGA	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	553
MlsI	TGGCCA	2 cut(s)	276, 523
MluCI	AATT	4 cut(s)	154, 203, 594, 667
MluNI	TGGCCA	2 cut(s)	276, 523
MmeI	TCCRAC	1 cut(s)	678
MnlI	CCTC	8 cut(s)	65, 75, 80, 125, 128, 227, 430, 593
Mox20I	TGGCCA	2 cut(s)	276, 523
MroXI	GAANNNNTTC	1 cut(s)	154
MscI	TGGCCA	2 cut(s)	276, 523
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	1 cut(s)	117
Msp20I	TGGCCA	2 cut(s)	276, 523
MspR9I	CCNGG	4 cut(s)	24, 278, 304, 324
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	4 cut(s)	24, 278, 304, 324
MvnI	CGCG	2 cut(s)	234, 336
MwoI	GCNNNNNNNGC	3 cut(s)	67, 76, 231
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	2 cut(s)	224, 247
NlaIV	GGNNCC	1 cut(s)	393
NmeAIII	GCCGAG	1 cut(s)	105
PctI	GAATGC	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	154
PfeI	GAWTC	6 cut(s)	43, 150, 260, 409, 427, 640
PkrI	GCNGC	3 cut(s)	60, 63, 184
Psp6I	CCWGG	4 cut(s)	22, 276, 302, 322
PspGI	CCWGG	4 cut(s)	22, 276, 302, 322
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	2 cut(s)	306, 485
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	3 cut(s)	59, 62, 183
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	2 cut(s)	306, 485
ScaI	AGTACT	1 cut(s)	454
ScrFI	CCNGG	4 cut(s)	24, 278, 304, 324
SduI	GDGCHC	1 cut(s)	553
SetI	ASST	8 cut(s)	112, 252, 274, 282, 444, 504, 583, 604
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	4 cut(s)	154, 203, 594, 667
SsiI	CCGC	3 cut(s)	18, 61, 234
SspMI	CTAG	2 cut(s)	129, 644
StyD4I	CCNGG	4 cut(s)	22, 276, 302, 322
StyI	CCWWGG	2 cut(s)	220, 309
TaaI	ACNGT	2 cut(s)	94, 570
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	1 cut(s)	30
TasI	AATT	4 cut(s)	154, 203, 594, 667
TatI	WGTACW	1 cut(s)	452
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	6 cut(s)	43, 150, 260, 409, 427, 640
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TseI	GCWGC	2 cut(s)	58, 182
TspDTI	ATGAA	1 cut(s)	351
XapI	RAATTY	1 cut(s)	203
XbaI	TCTAGA	1 cut(s)	643
XcmI	CCANNNNNNNNNTGG	1 cut(s)	375
XmiI	GTMKAC	1 cut(s)	475
XmnI	GAANNNNTTC	1 cut(s)	154
XspI	CTAG	2 cut(s)	129, 644
ZrmI	AGTACT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.