Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024985

Physical Location & Seq

Genomic Coordinates Forward (+)

45395011 .. 45396817

Gene Structure 1807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20018

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCGGGAAATGACTGGGTGAACAGTTACTTAGAGGCCATTCTCGACGTCGGTCCCGGCCTCGACGATGCCAAATCTTCGTCCTCGCTGCTGCTCCGGGAACGAGGTCGTTTCAGTCCCACTCGTTACTTCGTCGAAGAGGTCATCACTCGCTACGATGAGACTGATCTCCACCGCTCCTGGGTTCGAGTATGTGCCGAATCTAATCTCGTCGTTAATCTCGATTTTACGCTGCGGCGACGGCGAGGAGTGCCGAGGAGAGGAACAGTTGGTGATATTTCAGCTCATAATAGTGATAGCACTAGAGGAGGAAGAATGCGTAGAATCAATTCTATGGATGTGATGGCGAACTGGGCTGCTCATCAAAAGGAAAAGAAATTCTACATTGTCCTCCATGGCTTGATACGCGGTGAAAACATGGAGCTTGGTCGTGATTCTGATACAGGTGGCCAGGTCAAGTATGTTGTGGAACTTGCCAGGGCCTTGGGTTCAATGCCTGGAGTTTATCGCGTTGATTTACTAACAAGACAAGTTTCATCTCCAGATGTGGATTGGAGTTATGGGGAACCAACTGAAATGTTGAATCCAGTAAACTCTGAGAATCCACAAGAGGAGCTTGGGGAGAGTACTGGGGCTTATATAGTGCGTATACCATTTGTGGTCATGGTTGATTATTGTTGGCATTTCAGTTTTCAATTGGGCATGCCTTCTCAGAGTTATTTTGGCCCTTTGGTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0008194 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0016020 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0035251 GO:0043062 GO:0044085 GO:0044464 GO:0045229 GO:0046524 GO:0046527 GO:0046903 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0071836 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

246

Amino Acids

27.83

Weight (kDa)

5.78

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024985)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401671 RchiOBHm_Chr7g0223581
rosa_multiflora	Rmu_sc0023565.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
AccBSI	CCGCTC	1 cut(s)	177
AccI	GTMKAC	1 cut(s)	649
AccII	CGCG	2 cut(s)	408, 510
AciI	CCGC	4 cut(s)	5, 175, 235, 408
AcoI	YGGCCR	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	377
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	2 cut(s)	181, 260
AgsI	TTSAA	3 cut(s)	492, 583, 695
AjnI	CCWGG	4 cut(s)	179, 450, 476, 496
AluBI	AGCT	3 cut(s)	284, 424, 616
AluI	AGCT	3 cut(s)	284, 424, 616
Alw26I	GTCTC	1 cut(s)	155
AoxI	GGCC	5 cut(s)	36, 58, 448, 480, 724
ApeKI	GCWGC	4 cut(s)	88, 91, 232, 356
ApoI	RAATTY	1 cut(s)	377
Asp700I	GAANNNNTTC	1 cut(s)	328
AspS9I	GGNCC	3 cut(s)	53, 480, 725
AsuC2I	CCSGG	2 cut(s)	57, 98
AsuHPI	GGTGA	3 cut(s)	31, 284, 422
AvaII	GGWCC	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	450
BbvI	GCAGC	4 cut(s)	75, 78, 219, 343
BccI	CCATC	1 cut(s)	337
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	4 cut(s)	181, 452, 478, 498
BcnI	CCSGG	2 cut(s)	57, 98
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	5 cut(s)	89, 92, 233, 236, 357
BlsI	GCNGC	5 cut(s)	90, 93, 234, 237, 358
BmcAI	AGTACT	1 cut(s)	628
Bme1390I	CCNGG	6 cut(s)	57, 98, 181, 452, 478, 498
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	3 cut(s)	53, 480, 725
BmiI	GGNNCC	3 cut(s)	55, 567, 735
BmrFI	CCNGG	6 cut(s)	57, 98, 181, 452, 478, 498
BmrI	ACTGGG	3 cut(s)	25, 361, 639
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	3 cut(s)	25, 361, 639
BoxI	GACNNNNGTC	1 cut(s)	51
BpmI	CTGGAG	2 cut(s)	519, 525
BpuMI	CCSGG	2 cut(s)	57, 98
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	5 cut(s)	180, 254, 394, 477, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 260
Bse1I	ACTGG	4 cut(s)	20, 356, 587, 634
BseBI	CCWGG	4 cut(s)	181, 452, 478, 498
BseDI	CCNNGG	5 cut(s)	180, 254, 394, 477, 483
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	2 cut(s)	181, 260
BseMII	CTCAG	2 cut(s)	588, 725
BseNI	ACTGG	4 cut(s)	20, 356, 587, 634
BseRI	GAGGAG	4 cut(s)	261, 271, 321, 626
BseXI	GCAGC	4 cut(s)	75, 78, 219, 343
Bsh1236I	CGCG	2 cut(s)	408, 510
BshFI	GGCC	5 cut(s)	38, 60, 450, 482, 726
BsiSI	CCGG	2 cut(s)	57, 97
BslFI	GGGAC	2 cut(s)	39, 102
BslI	CCNNNNNNNGG	2 cut(s)	181, 260
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	39, 102
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	5 cut(s)	38, 60, 450, 482, 726
Bsp143I	GATC	1 cut(s)	166
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	4 cut(s)	5, 175, 235, 408
BspANI	GGCC	5 cut(s)	38, 60, 450, 482, 726
BspCNI	CTCAG	2 cut(s)	589, 724
BspFNI	CGCG	2 cut(s)	408, 510
BspLI	GGNNCC	3 cut(s)	55, 567, 735
BsrBI	CCGCTC	1 cut(s)	177
BsrI	ACTGG	4 cut(s)	20, 356, 587, 634
BssECI	CCNNGG	5 cut(s)	180, 254, 394, 477, 483
BssMI	GATC	1 cut(s)	166
BssNAI	GTATAC	1 cut(s)	650
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	2 cut(s)	394, 483
Bst1107I	GTATAC	1 cut(s)	650
Bst2UI	CCWGG	4 cut(s)	181, 452, 478, 498
Bst4CI	ACNGT	2 cut(s)	26, 268
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	704
BstDEI	CTNAG	4 cut(s)	31, 597, 711, 738
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	1 cut(s)	343
BstFNI	CGCG	2 cut(s)	408, 510
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	4 cut(s)	241, 250, 353, 405
BstNI	CCWGG	4 cut(s)	181, 452, 478, 498
BstNSI	RCATGY	1 cut(s)	706
BstPAI	GACNNNNGTC	1 cut(s)	51
BstSCI	CCNGG	6 cut(s)	55, 96, 179, 450, 476, 496
BstUI	CGCG	2 cut(s)	408, 510
BstV1I	GCAGC	4 cut(s)	75, 78, 219, 343
BstXI	CCANNNNNNTGG	1 cut(s)	484
BstZ17I	GTATAC	1 cut(s)	650
BsuRI	GGCC	5 cut(s)	38, 60, 450, 482, 726
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	704
Cfr13I	GGNCC	3 cut(s)	53, 480, 725
Csp6I	GTAC	1 cut(s)	627
CviAII	CATG	4 cut(s)	395, 418, 664, 703
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	4 cut(s)	31, 597, 711, 738
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	448
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	394, 483
Eco47I	GGWCC	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	480
EcoRII	CCWGG	4 cut(s)	179, 450, 476, 496
EcoT14I	CCWWGG	2 cut(s)	394, 483
ErhI	CCWWGG	2 cut(s)	394, 483
FaeI	CATG	4 cut(s)	398, 421, 667, 706
FalI	AAGNNNNNCTT	2 cut(s)	600, 632
FaqI	GGGAC	2 cut(s)	39, 102
FatI	CATG	4 cut(s)	394, 417, 663, 702
FblI	GTMKAC	1 cut(s)	649
Fnu4HI	GCNGC	5 cut(s)	89, 92, 233, 236, 357
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	5 cut(s)	89, 92, 233, 236, 357
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	5 cut(s)	89, 92, 233, 236, 357
GsuI	CTGGAG	2 cut(s)	519, 525
HaeIII	GGCC	5 cut(s)	38, 60, 450, 482, 726
HapII	CCGG	2 cut(s)	57, 97
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	4 cut(s)	398, 421, 667, 706
HinfI	GANTC	5 cut(s)	200, 324, 434, 583, 601
HpaII	CCGG	2 cut(s)	57, 97
HphI	GGTGA	3 cut(s)	31, 284, 422
Hpy166II	GTNNAC	3 cut(s)	22, 592, 650
Hpy188I	TCNGA	3 cut(s)	439, 598, 714
Hpy188III	TCNNGA	4 cut(s)	44, 221, 431, 542
Hpy8I	GTNNAC	3 cut(s)	22, 592, 650
Hpy99I	CGWCG	6 cut(s)	50, 53, 68, 137, 215, 243
HpyAV	CCTTC	1 cut(s)	717
HpyCH4III	ACNGT	2 cut(s)	26, 268
HpyCH4IV	ACGT	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	4 cut(s)	241, 250, 353, 405
HpyF3I	CTNAG	4 cut(s)	31, 597, 711, 738
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	4 cut(s)	398, 421, 667, 706
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	4 cut(s)	99, 182, 421, 613
Lsp1109I	GCAGC	4 cut(s)	75, 78, 219, 343
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	26, 125
MalI	GATC	1 cut(s)	168
MbiI	CCGCTC	1 cut(s)	177
MboI	GATC	1 cut(s)	166
MboII	GAAGA	3 cut(s)	69, 149, 324
MfeI	CAATTG	1 cut(s)	695
MlsI	TGGCCA	1 cut(s)	450
MluCI	AATT	3 cut(s)	328, 377, 695
MluNI	TGGCCA	1 cut(s)	450
Mox20I	TGGCCA	1 cut(s)	450
MroXI	GAANNNNTTC	1 cut(s)	328
MscI	TGGCCA	1 cut(s)	450
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	291
Msp20I	TGGCCA	1 cut(s)	450
MspI	CCGG	2 cut(s)	57, 97
MspR9I	CCNGG	6 cut(s)	57, 98, 181, 452, 478, 498
MunI	CAATTG	1 cut(s)	695
Mva1269I	GAATGC	1 cut(s)	321
MvaI	CCWGG	4 cut(s)	181, 452, 478, 498
MvnI	CGCG	2 cut(s)	408, 510
MwoI	GCNNNNNNNGC	4 cut(s)	241, 250, 353, 405
NciI	CCSGG	2 cut(s)	57, 98
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	4 cut(s)	398, 421, 667, 706
NlaIV	GGNNCC	3 cut(s)	55, 567, 735
NmeAIII	GCCGAG	1 cut(s)	279
NspI	RCATGY	1 cut(s)	706
PaeI	GCATGC	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PctI	GAATGC	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	328
PfeI	GAWTC	5 cut(s)	200, 324, 434, 583, 601
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	5 cut(s)	90, 93, 234, 237, 358
PshAI	GACNNNNGTC	1 cut(s)	51
Psp6I	CCWGG	4 cut(s)	179, 450, 476, 496
PspGI	CCWGG	4 cut(s)	179, 450, 476, 496
PspN4I	GGNNCC	3 cut(s)	55, 567, 735
PspPI	GGNCC	3 cut(s)	53, 480, 725
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	5 cut(s)	89, 92, 233, 236, 357
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	3 cut(s)	53, 480, 725
ScaI	AGTACT	1 cut(s)	628
ScrFI	CCNGG	6 cut(s)	57, 98, 181, 452, 478, 498
SetI	ASST	8 cut(s)	51, 109, 144, 286, 426, 448, 456, 618
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	291
SphI	GCATGC	1 cut(s)	706
Sse9I	AATT	3 cut(s)	328, 377, 695
SsiI	CCGC	4 cut(s)	5, 175, 235, 408
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	6 cut(s)	55, 96, 179, 450, 476, 496
StyI	CCWWGG	2 cut(s)	394, 483
TaaI	ACNGT	2 cut(s)	26, 268
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	5 cut(s)	45, 63, 135, 187, 222
TaqII	GACCGA	1 cut(s)	41
TasI	AATT	3 cut(s)	328, 377, 695
TatI	WGTACW	1 cut(s)	626
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	5 cut(s)	200, 324, 434, 583, 601
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseI	GCWGC	4 cut(s)	88, 91, 232, 356
TspDTI	ATGAA	1 cut(s)	525
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	377
XceI	RCATGY	1 cut(s)	706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	549
XmiI	GTMKAC	1 cut(s)	649
XmnI	GAANNNNTTC	1 cut(s)	328
XspI	CTAG	1 cut(s)	303
ZraI	GACGTC	1 cut(s)	49
ZrmI	AGTACT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.