RchiOBHm_Chr4g0401771

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
20013357 .. 20017139
3783 bp
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UTR
Exon/CDS
Intron
PRQ37367

Sequence Viewer

Length: 459 bp
ATGCTTCAAGATGTTCCATCGAGGAACTCAATATATGAGCGTGTAGATTCTTCACTCCACAAAATTCGTGATACGTCGGAGGTAATTTTGTCTTTAAGTCAGCAATTTCTTAGTTGTATAATTTTAAGCCTATGGCTTCCAGTCAGTCATCTGCAGGCTGTACAAACTTTTGCTGCTGAGTATCTAAAAACTCCGCTTGGCGAGCCAATGAAGGGCAGGAAGAACAAAACCTCCACTGGGCTATGGGTGGAGAAGTCTTACAAGAAAACCACTAACTTGCCTGAACCTTTCTCACATGAATTAGTTGCTAGATTGGAGAACTTAAATAGTATCTACCTCAAAGTTTTAATCCAAGCATGGAAAGACGAGAGACAAAGGAACTATAGGAAGAATGTCAACAGATGCTTGCTGAATTTCCTAACAACTTTAAGAAATACCAAAATATCCTTGATGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.69

Weight (kDa)

9.76

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022721)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0401771
rosa_samantha Rh3BG299600 Rh7AG246600 Rh7BG186700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 194
AcsI RAATTY 2 cut(s) 63, 412
AfaI GTAC 1 cut(s) 162
AfiI CCNNNNNNNGG 2 cut(s) 212, 237
AgsI TTSAA 1 cut(s) 8
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
Alw26I GTCTC 1 cut(s) 364
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 2 cut(s) 63, 412
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 364
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 2 cut(s) 152, 382
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 1 cut(s) 392
BmuI ACTGGG 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 237
Bse1I ACTGG 2 cut(s) 140, 241
BseLI CCNNNNNNNGG 2 cut(s) 212, 237
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 2 cut(s) 140, 241
BseXI GCAGC 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 212, 237
BsmAI GTCTC 1 cut(s) 364
Bsp1407I TGTACA 1 cut(s) 160
BspACI CCGC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 169
BspMAI CTGCAG 1 cut(s) 156
BsrGI TGTACA 1 cut(s) 160
BsrI ACTGG 2 cut(s) 140, 241
BstAUI TGTACA 1 cut(s) 160
BstC8I GCNNGC 3 cut(s) 156, 203, 407
BstDEI CTNAG 2 cut(s) 110, 177
BstMAI GTCTC 1 cut(s) 364
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstSFI CTRYAG 2 cut(s) 152, 382
BstV1I GCAGC 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 3 cut(s) 156, 203, 407
Csp6I GTAC 1 cut(s) 161
CviAII CATG 2 cut(s) 296, 357
CviJI RGCY 5 cut(s) 129, 136, 158, 205, 241
CviKI_1 RGCY 5 cut(s) 129, 136, 158, 205, 241
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 2 cut(s) 110, 177
FaeI CATG 2 cut(s) 299, 360
FaiI YATR 9 cut(s) 34, 36, 119, 133, 244, 297, 358, 384, 457
FatI CATG 2 cut(s) 295, 356
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 1 cut(s) 309
GluI GCNGC 1 cut(s) 174
Hin1II CATG 2 cut(s) 299, 360
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 2 cut(s) 8, 68
Hpy8I GTNNAC 1 cut(s) 397
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 2 cut(s) 110, 177
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 2 cut(s) 299, 360
LpnPI CCDG 5 cut(s) 140, 153, 202, 222, 294
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 392
MaeI CTAG 1 cut(s) 309
MaeII ACGT 1 cut(s) 74
MboII GAAGA 3 cut(s) 42, 232, 400
MluCI AATT 6 cut(s) 63, 84, 104, 120, 299, 412
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 4 cut(s) 15, 73, 241, 347
MseI TTAA 5 cut(s) 95, 125, 323, 347, 428
MwoI GCNNNNNNNGC 1 cut(s) 202
NlaIII CATG 2 cut(s) 299, 360
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 1 cut(s) 175
PstI CTGCAG 1 cut(s) 156
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SaqAI TTAA 5 cut(s) 95, 125, 323, 347, 428
SatI GCNGC 1 cut(s) 174
SetI ASST 5 cut(s) 77, 84, 233, 289, 339
SfaNI GCATC 1 cut(s) 392
SfcI CTRYAG 2 cut(s) 152, 382
Sse9I AATT 6 cut(s) 63, 84, 104, 120, 299, 412
SsiI CCGC 1 cut(s) 194
SspMI CTAG 1 cut(s) 309
TaiI ACGT 1 cut(s) 77
TaqI TCGA 1 cut(s) 20
TasI AATT 6 cut(s) 63, 84, 104, 120, 299, 412
TatI WGTACW 1 cut(s) 160
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 5 cut(s) 95, 125, 323, 347, 428
Tru9I TTAA 5 cut(s) 95, 125, 323, 347, 428
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 224, 312
TspRI CASTG 1 cut(s) 241
XapI RAATTY 2 cut(s) 63, 412
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.