Rh3BG299600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0022721
Physical Location & Seq
Forward (+)
30083267 .. 30087663
4397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG299600.1

Sequence Viewer

Length: 657 bp
ATGAGGGCCATCATCACCCACCTGTTCAATCTGTCCATTAGCGTTAGGAAGAGTGACTATCTGTTGTGCATCAGTCGAGTTCTCAGTCGTAGCCACTACCACAGTGTCGGTAGCGAAACCAATTGGTCTCACAACATCATGAACCGCAGTGACAGTGGCATCCGTAGAGCCATTCCTATTCTCCAACGTAGGGAGAAGACAAGGAACCTGAGAAGAAGTCCGCTTAGAGAAGGAAGGACCCTCTCCAGGGATTGTGAGCGTGTAGATTCTTCACAATATATGAGCTCAATATATGAGCGTGTAGATTCTTCACTCCACAAAATTCGTGATACGTCGGAGGCTGTACAAACTTTTGCTGCTGAGTATCTGAAAACTCCGCTTGGCGAGCCAATGAAGGGCAGGAAGAACAAAACCTCCACTGGGCTATGGGTGGAGAAGTCTTACAAGAAAACCACTAACTTGCCTGAACCTTTCTCACATGAATTAGTTGCTAGATTGGAGAACTTAAATGACATGACAAAGTTATTTACTTGTGTATTTGCTTCACTTCCAGATGATGTGAAACTTGACAACATACTCAATGAGAAGATGGCTTTAGTTCAACAATTCATTCGACCAGCTTTACTTCAACCCTTTGCTGAAAGCATGGATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

25.2

Weight (kDa)

9.68

Isoelectric Point (pI)

60.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022721)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0401771
rosa_samantha Rh3BG299600 Rh7AG246600 Rh7BG186700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 145, 221, 377
AcsI RAATTY 1 cut(s) 321
AfaI GTAC 1 cut(s) 345
AfiI CCNNNNNNNGG 5 cut(s) 190, 246, 247, 395, 420
AgsI TTSAA 3 cut(s) 28, 602, 629
AjnI CCWGG 1 cut(s) 245
AloI GAACNNNNNNTCC 2 cut(s) 398, 430
AluBI AGCT 2 cut(s) 285, 620
AluI AGCT 2 cut(s) 285, 620
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 132
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 321
AspS9I GGNCC 2 cut(s) 6, 237
AsuHPI GGTGA 1 cut(s) 7
AvaII GGWCC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 343
BccI CCATC 2 cut(s) 17, 583
BciT130I CCWGG 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 1 cut(s) 492
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 247
Bme18I GGWCC 1 cut(s) 237
BmgT120I GGNCC 2 cut(s) 6, 237
BmiI GGNNCC 2 cut(s) 206, 239
BmrFI CCNGG 1 cut(s) 247
BmrI ACTGGG 1 cut(s) 429
BmsI GCATC 2 cut(s) 78, 168
BmuI ACTGGG 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 229
BsaI GGTCTC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 5 cut(s) 190, 246, 247, 395, 420
Bse1I ACTGG 1 cut(s) 424
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 5 cut(s) 190, 246, 247, 395, 420
BseMII CTCAG 3 cut(s) 97, 200, 351
BseNI ACTGG 1 cut(s) 424
BseXI GCAGC 1 cut(s) 343
BshFI GGCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 287
BslI CCNNNNNNNGG 5 cut(s) 190, 246, 247, 395, 420
BsmAI GTCTC 1 cut(s) 132
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 287
Bsp1407I TGTACA 1 cut(s) 343
BspACI CCGC 3 cut(s) 145, 221, 377
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 3 cut(s) 96, 201, 352
BspHI TCATGA 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 206, 239
BspTNI GGTCTC 1 cut(s) 132
BsrGI TGTACA 1 cut(s) 343
BsrI ACTGG 1 cut(s) 424
BssECI CCNNGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 2 cut(s) 104, 155
Bst6I CTCTTC 1 cut(s) 44
BstAUI TGTACA 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 386
BstDEI CTNAG 4 cut(s) 83, 209, 224, 360
BstF5I GGATG 1 cut(s) 159
BstMAI GTCTC 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstNI CCWGG 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 343
BstV2I GAAGAC 1 cut(s) 203
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 159
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 4 cut(s) 109, 154, 160, 417
Cac8I GCNNGC 1 cut(s) 386
CciI TCATGA 1 cut(s) 138
Cfr13I GGNCC 2 cut(s) 6, 237
Csp6I GTAC 1 cut(s) 344
CviAII CATG 4 cut(s) 139, 479, 514, 646
CviJI RGCY 9 cut(s) 8, 93, 170, 285, 341, 388, 424, 593, 620
CviKI_1 RGCY 9 cut(s) 8, 93, 170, 285, 341, 388, 424, 593, 620
CviQI GTAC 1 cut(s) 344
DdeI CTNAG 4 cut(s) 83, 209, 224, 360
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 287
FaeI CATG 4 cut(s) 142, 482, 517, 649
FatI CATG 4 cut(s) 138, 478, 513, 645
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 1 cut(s) 492
GluI GCNGC 1 cut(s) 357
GsuI CTGGAG 1 cut(s) 229
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 4 cut(s) 142, 482, 517, 649
HinfI GANTC 2 cut(s) 266, 305
HphI GGTGA 1 cut(s) 7
Hpy188I TCNGA 2 cut(s) 337, 369
Hpy188III TCNNGA 3 cut(s) 139, 326, 551
Hpy99I CGWCG 1 cut(s) 337
HpyAV CCTTC 3 cut(s) 224, 228, 388
HpyCH4III ACNGT 2 cut(s) 104, 155
HpyCH4IV ACGT 2 cut(s) 187, 332
HpyCH4V TGCA 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpyF3I CTNAG 4 cut(s) 83, 209, 224, 360
HpySE526I ACGT 2 cut(s) 187, 332
Hsp92II CATG 4 cut(s) 142, 482, 517, 649
LpnPI CCDG 9 cut(s) 35, 221, 232, 259, 385, 405, 477, 564, 630
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 2 cut(s) 78, 168
MaeI CTAG 1 cut(s) 492
MaeII ACGT 2 cut(s) 187, 332
MaeIII GTNAC 2 cut(s) 53, 149
MboII GAAGA 7 cut(s) 61, 208, 225, 261, 300, 415, 598
MfeI CAATTG 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 4 cut(s) 121, 321, 482, 605
MmeI TCCRAC 2 cut(s) 208, 315
MnlI CCTC 3 cut(s) 251, 331, 424
MseI TTAA 1 cut(s) 506
MspR9I CCNGG 1 cut(s) 247
MunI CAATTG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 385
NlaIII CATG 4 cut(s) 142, 482, 517, 649
NlaIV GGNNCC 2 cut(s) 206, 239
NmuCI GTSAC 2 cut(s) 53, 149
PagI TCATGA 1 cut(s) 138
PfeI GAWTC 2 cut(s) 266, 305
PkrI GCNGC 1 cut(s) 358
PpuMI RGGWCCY 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 245
PspGI CCWGG 1 cut(s) 245
PspN4I GGNNCC 2 cut(s) 206, 239
PspPI GGNCC 2 cut(s) 6, 237
PspPPI RGGWCCY 1 cut(s) 237
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
SacI GAGCTC 1 cut(s) 287
SaqAI TTAA 1 cut(s) 506
SatI GCNGC 1 cut(s) 357
Sau96I GGNCC 2 cut(s) 6, 237
ScrFI CCNGG 1 cut(s) 247
SduI GDGCHC 1 cut(s) 287
SetI ASST 8 cut(s) 24, 190, 210, 287, 335, 416, 472, 622
SfaNI GCATC 2 cut(s) 78, 168
SinI GGWCC 1 cut(s) 237
Sse9I AATT 4 cut(s) 121, 321, 482, 605
SsiI CCGC 3 cut(s) 145, 221, 377
SspMI CTAG 1 cut(s) 492
SstI GAGCTC 1 cut(s) 287
StyD4I CCNGG 1 cut(s) 245
TaaI ACNGT 2 cut(s) 104, 155
TaiI ACGT 2 cut(s) 190, 335
TaqI TCGA 2 cut(s) 76, 613
TasI AATT 4 cut(s) 121, 321, 482, 605
TatI WGTACW 1 cut(s) 343
TfiI GAWTC 2 cut(s) 266, 305
Tru1I TTAA 1 cut(s) 506
Tru9I TTAA 1 cut(s) 506
TscAI CASTG 4 cut(s) 109, 154, 160, 424
TseFI GTSAC 2 cut(s) 53, 149
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 2 cut(s) 53, 149
TspDTI ATGAA 4 cut(s) 155, 407, 495, 598
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 4 cut(s) 109, 154, 160, 424
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 1 cut(s) 321
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.