RchiOBHm_Chr4g0409911

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
33519162 .. 33519475
314 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38088

Sequence Viewer

Length: 231 bp
ATGCATCATGATTGTGTGCTACCTATTGTGCATCGAGACACATCAAGCAGCAACATTTTGCTCAATGACGACTGTGAGCCCTGTGTTGCAGACTTTGGCACTGCCAAGCTTTTAAATCCAGACTCATCAAATTGGACAACCCCGGCAGGAACATATGGATATGTAGCCCCAGAGCTCGCTTTCACTATGAAGGTAACTGAGAAATGTGAGTGCTGGCACTGGAAGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

76

Amino Acids

8.5

Weight (kDa)

5.04

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 9 - 72 6.5e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 9 - 73 2.6e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022745)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 2 cut(s) 109, 175
AluI AGCT 2 cut(s) 109, 175
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 48
AsuC2I CCSGG 1 cut(s) 143
BanII GRGCYC 2 cut(s) 81, 177
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 60
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 30
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
Bme1390I CCNGG 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 2 cut(s) 13, 40
BpuMI CCSGG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 81, 177
BspCNI CTCAG 1 cut(s) 190
BspHI TCATGA 1 cut(s) 7
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 177, 215
BstDEI CTNAG 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 217
Cac8I GCNNGC 2 cut(s) 177, 215
CciI TCATGA 1 cut(s) 7
CviAII CATG 1 cut(s) 8
CviJI RGCY 4 cut(s) 79, 109, 167, 175
CviKI_1 RGCY 4 cut(s) 79, 109, 167, 175
DdeI CTNAG 1 cut(s) 198
DraI TTTAAA 1 cut(s) 114
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 2 cut(s) 81, 177
Eco53kI GAGCTC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 175
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 81, 177
FaeI CATG 1 cut(s) 11
FaiI YATR 5 cut(s) 9, 154, 156, 162, 188
FatI CATG 1 cut(s) 7
FauNDI CATATG 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 49
FriOI GRGCYC 2 cut(s) 81, 177
Fsp4HI GCNGC 1 cut(s) 49
GluI GCNGC 1 cut(s) 49
HapII CCGG 1 cut(s) 143
Hin1II CATG 1 cut(s) 11
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 1 cut(s) 122
HpaII CCGG 1 cut(s) 143
Hpy188III TCNNGA 3 cut(s) 8, 35, 119
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4V TGCA 3 cut(s) 4, 31, 89
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 1 cut(s) 11
LpnPI CCDG 7 cut(s) 94, 132, 132, 156, 183, 199, 205
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 2 cut(s) 13, 40
MaeIII GTNAC 1 cut(s) 193
MhlI GDGCHC 2 cut(s) 81, 177
MluCI AATT 1 cut(s) 130
MlyI GAGTC 1 cut(s) 116
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 12
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 143
NciI CCSGG 1 cut(s) 143
NdeI CATATG 1 cut(s) 154
NlaIII CATG 1 cut(s) 11
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 7
PkrI GCNGC 1 cut(s) 50
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Psp124BI GAGCTC 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 12
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 1 cut(s) 49
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 2 cut(s) 81, 177
SetI ASST 4 cut(s) 25, 111, 177, 195
SfaNI GCATC 2 cut(s) 13, 40
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 1 cut(s) 130
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 34
TasI AATT 1 cut(s) 130
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 2 cut(s) 106, 224
TseI GCWGC 1 cut(s) 48
TspDTI ATGAA 1 cut(s) 203
TspRI CASTG 2 cut(s) 106, 224
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.