RchiOBHm_Chr7g0239571

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
65188095 .. 65188441
347 bp
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UTR
Exon/CDS
Intron
PRQ21471

Sequence Viewer

Length: 240 bp
ATGCACCATGATTGTTTGCCACCAATTGTGCATCGAGACATATCAAGCAAGAACATTTTGCTGGATGGTGAATATGAAGCCTGTGTTTCAGACTTTGGCACTGCCAAGTTCTTAAACCCAGACTCAGCTAATGAGACTACTCTTGCAGGCACTCATGGATATGTGGCACCAGAGCTTGCTTATACAATGGAAGTGAATGAGAAATGTGATGTTTATAGCTTTCAATTGATAACACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

79

Amino Acids

8.76

Weight (kDa)

4.56

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 9 - 77 6.3e-15 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 9 - 76 6.7e-12 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022745)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 166
AgsI TTSAA 1 cut(s) 224
AluBI AGCT 3 cut(s) 128, 175, 219
AluI AGCT 3 cut(s) 128, 175, 219
Alw26I GTCTC 2 cut(s) 30, 128
AsuHPI GGTGA 1 cut(s) 80
BanI GGYRCC 1 cut(s) 166
BccI CCATC 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 30, 128
BfmI CTRYAG 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 168
BmsI GCATC 1 cut(s) 40
BseGI GGATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 166
BsmAI GTCTC 2 cut(s) 30, 128
BspCNI CTCAG 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 237
BstC8I GCNNGC 2 cut(s) 148, 177
BstDEI CTNAG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 70
BstMAI GTCTC 2 cut(s) 30, 128
BstSFI CTRYAG 1 cut(s) 236
BtsCI GGATG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 233
Cac8I GCNNGC 2 cut(s) 148, 177
CviAII CATG 2 cut(s) 8, 155
CviJI RGCY 4 cut(s) 80, 128, 175, 219
CviKI_1 RGCY 4 cut(s) 80, 128, 175, 219
DdeI CTNAG 1 cut(s) 124
FaeI CATG 2 cut(s) 11, 158
FaiI YATR 7 cut(s) 9, 41, 75, 156, 162, 183, 216
FatI CATG 2 cut(s) 7, 154
FokI GGATG 1 cut(s) 77
Hin1II CATG 2 cut(s) 11, 158
HinfI GANTC 1 cut(s) 122
HphI GGTGA 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 35
HpyCH4III ACNGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 4, 31, 146
HpyF3I CTNAG 1 cut(s) 124
Hsp92II CATG 2 cut(s) 11, 158
LpnPI CCDG 5 cut(s) 47, 94, 132, 132, 183
LweI GCATC 1 cut(s) 40
MfeI CAATTG 2 cut(s) 24, 224
MluCI AATT 2 cut(s) 24, 224
MlyI GAGTC 1 cut(s) 116
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 159
MunI CAATTG 2 cut(s) 24, 224
NlaIII CATG 2 cut(s) 11, 158
NlaIV GGNNCC 1 cut(s) 168
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 113
SchI GAGTC 1 cut(s) 116
SetI ASST 3 cut(s) 130, 177, 221
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 2 cut(s) 24, 224
TaaI ACNGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 34
TasI AATT 2 cut(s) 24, 224
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 2 cut(s) 106, 240
TspDTI ATGAA 1 cut(s) 90
TspRI CASTG 2 cut(s) 106, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.