RchiOBHm_Chr7g0221471

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
42534567 .. 42534880
314 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19818

Sequence Viewer

Length: 231 bp
ATGCATCATGATTGTGTGTTACCGATTGTGCATCGAGACATATCAAGCAACAACATTTTGCTGAATGATGATTATGAGCCCTGTGTTGCAGACTTTGGCACTACCAAGCTTTTAAATCCAGGCTCATCAAATTGGACAACCCCTGCAGGAACATATGGATATGTAGTCCCAGAGCTCGCTTTCACGATGAAGGTAACTGAGAAATGTGATGTTTATAGCTTTGGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

76

Amino Acids

8.41

Weight (kDa)

4.72

Isoelectric Point (pI)

28.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 9 - 76 3.6e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 9 - 75 1.5e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022745)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 3 cut(s) 109, 175, 219
AluI AGCT 3 cut(s) 109, 175, 219
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 30
BanII GRGCYC 2 cut(s) 81, 177
Bbv12I GWGCWC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 144
Bme1390I CCNGG 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 2 cut(s) 13, 40
BseBI CCWGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 177
BslFI GGGAC 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 81, 177
BspCNI CTCAG 1 cut(s) 190
BspHI TCATGA 1 cut(s) 7
BspMAI CTGCAG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 230
BstMAI GTCTC 1 cut(s) 30
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 177
CciI TCATGA 1 cut(s) 7
CviAII CATG 1 cut(s) 8
CviJI RGCY 5 cut(s) 79, 109, 123, 175, 219
CviKI_1 RGCY 5 cut(s) 79, 109, 123, 175, 219
DdeI CTNAG 1 cut(s) 198
DraI TTTAAA 1 cut(s) 114
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 2 cut(s) 81, 177
Eco53kI GAGCTC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 118
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 81, 177
FaeI CATG 1 cut(s) 11
FaiI YATR 7 cut(s) 9, 41, 75, 154, 156, 162, 216
FaqI GGGAC 1 cut(s) 152
FatI CATG 1 cut(s) 7
FauNDI CATATG 1 cut(s) 154
FriOI GRGCYC 2 cut(s) 81, 177
Hin1II CATG 1 cut(s) 11
HindIII AAGCTT 1 cut(s) 107
Hpy188III TCNNGA 3 cut(s) 8, 35, 184
HpyAV CCTTC 1 cut(s) 184
HpyCH4V TGCA 4 cut(s) 4, 31, 89, 146
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 1 cut(s) 11
LpnPI CCDG 6 cut(s) 94, 105, 132, 132, 156, 183
LweI GCATC 2 cut(s) 13, 40
MaeIII GTNAC 2 cut(s) 18, 193
MhlI GDGCHC 2 cut(s) 81, 177
MluCI AATT 1 cut(s) 130
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 113, 229
MslI CAYNNNNRTG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
NdeI CATATG 1 cut(s) 154
NlaIII CATG 1 cut(s) 11
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 7
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PstI CTGCAG 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 12
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 113, 229
SbfI CCTGCAGG 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 120
SdaI CCTGCAGG 1 cut(s) 148
SduI GDGCHC 2 cut(s) 81, 177
SetI ASST 4 cut(s) 111, 177, 195, 221
SfaNI GCATC 2 cut(s) 13, 40
SfcI CTRYAG 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse8387I CCTGCAGG 1 cut(s) 148
Sse9I AATT 1 cut(s) 130
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 118
TaqI TCGA 1 cut(s) 34
TasI AATT 1 cut(s) 130
Tru1I TTAA 2 cut(s) 113, 229
Tru9I TTAA 2 cut(s) 113, 229
TspDTI ATGAA 1 cut(s) 203
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.