RchiOBHm_Chr4g0416851

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
42031236 .. 42032712
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38695

Sequence Viewer

Length: 252 bp
ATGCTATTGCTTAACCAGCTTCTCGAGGTCGTTGTTATTACTGATTTGAACATCGGGCGATCCAAGGGCTATGGTTTTGTTGCCGGATTTTCTGTTGGGACTTGGTGGCTGCCGTCTCTAAGCCATTCAGACGACAGATATTCTCCGTCGTTGATAATGCACTCAGACGACAGTAATCTGTTGTCTGAAGTACCTAATATTGAAGAATCGGAGTCTATCTGTCGTCTGAAACACCATACAACTACATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.34

Weight (kDa)

5.07

Isoelectric Point (pI)

57.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019913)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 54
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 1 cut(s) 192
AgsI TTSAA 2 cut(s) 49, 203
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 1 cut(s) 54
Ama87I CYCGRG 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 23
BbvI GCAGC 1 cut(s) 96
BceAI ACGGC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 120
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
BmeT110I CYCGRG 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 120
BsmBI CGTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 112
BsoBI CYCGRG 1 cut(s) 23
Bsp143I GATC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 176
BspPI GGATC 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 173
BstDEI CTNAG 2 cut(s) 119, 163
BstKTI GATC 1 cut(s) 62
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 59
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 191
CviJI RGCY 4 cut(s) 19, 69, 109, 123
CviKI_1 RGCY 4 cut(s) 19, 69, 109, 123
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 2 cut(s) 119, 163
DpnI GATC 1 cut(s) 61
DpnII GATC 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 120
FaiI YATR 3 cut(s) 72, 237, 247
FaqI GGGAC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 110
GluI GCNGC 1 cut(s) 110
HapII CCGG 1 cut(s) 84
HinfI GANTC 2 cut(s) 206, 212
HpaII CCGG 1 cut(s) 84
Hpy188I TCNGA 5 cut(s) 130, 166, 187, 211, 228
Hpy188III TCNNGA 1 cut(s) 23
Hpy99I CGWCG 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 2 cut(s) 119, 163
Kzo9I GATC 1 cut(s) 59
LpnPI CCDG 2 cut(s) 29, 97
Lsp1109I GCAGC 1 cut(s) 96
MalI GATC 1 cut(s) 61
MboI GATC 1 cut(s) 59
MboII GAAGA 1 cut(s) 215
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 1 cut(s) 19
MseI TTAA 2 cut(s) 12, 250
MspI CCGG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 16
NdeII GATC 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 23
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 111
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 12, 250
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 1 cut(s) 59
SchI GAGTC 1 cut(s) 221
SetI ASST 3 cut(s) 21, 30, 196
Sfr274I CTCGAG 1 cut(s) 23
SgeI CNNG 7 cut(s) 28, 35, 37, 67, 76, 96, 114
SlaI CTCGAG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SspI AATATT 1 cut(s) 199
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 24
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 2 cut(s) 12, 250
Tru9I TTAA 2 cut(s) 12, 250
TseI GCWGC 1 cut(s) 109
TspGWI ACGGA 1 cut(s) 135
XhoI CTCGAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.