RLG00000033819

Tubby-like F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019913
Physical Location & Seq
Reverse (-)
32602083 .. 32602767
685 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033819

Sequence Viewer

Length: 474 bp
ATGCCCAAGCTCGACTCCACTGCGCCACTACCAAGCCCAAGGAGGCCAAGCTCTGGGGTGACCGCTTCGAGGAGGGCCTCACCAACGCCGTCAAGCTCTTCACCGAGTCCATTTCCTTCGACAAATCCCTTTACAAGCATGATATCATTGGCAGCAAGGCCCACGCCTCAATGCTCCCCAAACAGGGATTCATCACTGTTGGGGATAGGGATAACATTTATAAAGGGCTTACGGAGATTCAGAGGCGAATTAAGGATTGATAGGGAAGACGTGCATATGAACATTAAGGTGGCGCTAGAAGTTTCTGCAGGTGTGTGCAAGAATTGGAGAGAGATTATGAAAGAGATTGTCAAGTCCCTAGAAGTTTTGGGGAAGCTGACGTTTCCAATCTCCTTGAAGCAGTTAAATGTTTGGATCACTGTGGCTAAGAAATTTGACATGCCTGATAATGATGTAATGCAGTCTGCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Tub

Protein Analysis

158

Amino Acids

17.3

Weight (kDa)

10.08

Isoelectric Point (pI)

71.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019913)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0451011 RchiOBHm_Chr4g0416851 RchiOBHm_Chr5g0081081 RchiOBHm_Chr6g0256441
rosa_laevigata RLG00000033819
rosa_rugosa Rorug05G0541400
rosa_samantha Rh6DG387700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AarI CACCTGC 1 cut(s) 299
Acc36I ACCTGC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 53
AciI CCGC 1 cut(s) 63
AclWI GGATC 1 cut(s) 422
AcsI RAATTY 1 cut(s) 431
AfiI CCNNNNNNNGG 4 cut(s) 53, 69, 183, 184
AgsI TTSAA 1 cut(s) 397
AjiI CACGTC 1 cut(s) 271
AjuI GAANNNNNNNTTGG 2 cut(s) 172, 204
AluBI AGCT 4 cut(s) 10, 51, 96, 376
AluI AGCT 4 cut(s) 10, 51, 96, 376
AlwI GGATC 1 cut(s) 422
AoxI GGCC 3 cut(s) 44, 75, 158
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 431
AspLEI GCGC 2 cut(s) 25, 295
AspS9I GGNCC 2 cut(s) 75, 159
AsuHPI GGTGA 3 cut(s) 70, 72, 93
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 164
BceAI ACGGC 1 cut(s) 73
BcgI CGANNNNNNTGC 1 cut(s) 36
BfaI CTAG 3 cut(s) 296, 359, 472
BfmI CTRYAG 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 296
BfuAI ACCTGC 1 cut(s) 299
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 2 cut(s) 75, 159
BpiI GAAGAC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 69, 183, 184
BseDI CCNNGG 1 cut(s) 38
BseLI CCNNNNNNNGG 4 cut(s) 53, 69, 183, 184
BseRI GAGGAG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 164
BshFI GGCC 3 cut(s) 46, 77, 160
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 4 cut(s) 53, 69, 183, 184
BsmFI GGGAC 1 cut(s) 340
BsnI GGCC 3 cut(s) 46, 77, 160
Bsp143I GATC 1 cut(s) 414
BspACI CCGC 1 cut(s) 63
BspANI GGCC 3 cut(s) 46, 77, 160
BspMAI CTGCAG 1 cut(s) 310
BspMI ACCTGC 1 cut(s) 299
BspPI GGATC 1 cut(s) 422
BspQI GCTCTTC 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 38
Bst4CI ACNGT 2 cut(s) 198, 421
Bst6I CTCTTC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 426
BstEII GGTNACC 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 2 cut(s) 25, 295
BstKTI GATC 1 cut(s) 417
BstMBI GATC 1 cut(s) 414
BstNSI RCATGY 1 cut(s) 442
BstPI GGTNACC 1 cut(s) 58
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 1 cut(s) 273
BsuRI GGCC 3 cut(s) 46, 77, 160
BtrI CACGTC 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 3 cut(s) 18, 194, 417
BveI ACCTGC 1 cut(s) 299
CfoI GCGC 2 cut(s) 25, 295
Cfr13I GGNCC 2 cut(s) 75, 159
CviAII CATG 2 cut(s) 139, 439
DdeI CTNAG 1 cut(s) 426
DpnI GATC 1 cut(s) 416
DpnII GATC 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 38
Eco32I GATATC 1 cut(s) 144
Eco91I GGTNACC 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 75
EcoO65I GGTNACC 1 cut(s) 58
EcoRV GATATC 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 2 cut(s) 142, 442
FaiI YATR 7 cut(s) 140, 221, 276, 278, 338, 440, 469
FaqI GGGAC 1 cut(s) 340
FatI CATG 2 cut(s) 138, 438
FauNDI CATATG 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 3 cut(s) 296, 359, 472
GlaI GCGC 2 cut(s) 24, 294
GluI GCNGC 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 3 cut(s) 46, 77, 160
HhaI GCGC 2 cut(s) 25, 295
Hin1II CATG 2 cut(s) 142, 442
Hin6I GCGC 2 cut(s) 23, 293
HinP1I GCGC 2 cut(s) 23, 293
HinfI GANTC 4 cut(s) 14, 106, 188, 237
HphI GGTGA 3 cut(s) 70, 72, 93
Hpy188I TCNGA 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 126
HpyCH4III ACNGT 2 cut(s) 198, 421
HpyCH4IV ACGT 2 cut(s) 270, 380
HpyCH4V TGCA 5 cut(s) 274, 308, 318, 460, 467
HpyF3I CTNAG 1 cut(s) 426
HpySE526I ACGT 2 cut(s) 270, 380
Hsp92II CATG 2 cut(s) 142, 442
HspAI GCGC 2 cut(s) 23, 293
Kzo9I GATC 1 cut(s) 414
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 4 cut(s) 39, 169, 294, 456
Lsp1109I GCAGC 1 cut(s) 164
MaeI CTAG 3 cut(s) 296, 359, 472
MaeII ACGT 2 cut(s) 270, 380
MaeIII GTNAC 1 cut(s) 58
MalI GATC 1 cut(s) 416
MboI GATC 1 cut(s) 414
MboII GAAGA 2 cut(s) 90, 278
MluCI AATT 3 cut(s) 248, 322, 431
MlyI GAGTC 2 cut(s) 8, 115
MnlI CCTC 6 cut(s) 36, 63, 66, 88, 177, 236
MseI TTAA 3 cut(s) 251, 285, 404
MslI CAYNNNNRTG 1 cut(s) 287
NdeI CATATG 1 cut(s) 276
NdeII GATC 1 cut(s) 414
NlaIII CATG 2 cut(s) 142, 442
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 1 cut(s) 442
PaqCI CACCTGC 1 cut(s) 299
PciSI GCTCTTC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 188, 237
PflMI CCANNNNNTGG 1 cut(s) 53
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 2 cut(s) 8, 114
PpsI GAGTC 2 cut(s) 8, 114
PsiI TTATAA 1 cut(s) 221
PspEI GGTNACC 1 cut(s) 58
PspPI GGNCC 2 cut(s) 75, 159
PstI CTGCAG 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 287
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 3 cut(s) 251, 285, 404
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 414
Sau96I GGNCC 2 cut(s) 75, 159
SchI GAGTC 2 cut(s) 8, 115
SetI ASST 8 cut(s) 12, 53, 98, 273, 291, 313, 378, 383
SfcI CTRYAG 1 cut(s) 306
SmiMI CAYNNNNRTG 1 cut(s) 287
Sse9I AATT 3 cut(s) 248, 322, 431
SsiI CCGC 1 cut(s) 63
SspMI CTAG 3 cut(s) 296, 359, 472
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 2 cut(s) 198, 421
TaiI ACGT 2 cut(s) 273, 383
TaqI TCGA 3 cut(s) 12, 68, 119
TasI AATT 3 cut(s) 248, 322, 431
TfiI GAWTC 2 cut(s) 188, 237
Tru1I TTAA 3 cut(s) 251, 285, 404
Tru9I TTAA 3 cut(s) 251, 285, 404
TscAI CASTG 3 cut(s) 25, 201, 424
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 3 cut(s) 180, 293, 353
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 3 cut(s) 25, 201, 424
Van91I CCANNNNNTGG 1 cut(s) 53
XapI RAATTY 1 cut(s) 431
XceI RCATGY 1 cut(s) 442
XspI CTAG 3 cut(s) 296, 359, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.